View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_114 (Length: 295)
Name: NF8548A_low_114
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_114 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 37768235 - 37768515
Alignment:
| Q |
6 |
atatacttcactgatcttagcctatgccatgtaaattaaaataaaacaataaatagacaataattaattaagttgatcataa---tgttgtgtttagtaa |
102 |
Q |
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| T |
37768235 |
atatacttcactgatcttagcctatgccatgtaaattaaaa-----caataaatagacaataattaattaagttgatcataataatgttgtgtttagtaa |
37768329 |
T |
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| Q |
103 |
ctaattaattacctgaataatgagccagattgagaaacagaagcaactgagtaagacacatagaacacctaacaattcagtggtagtatcagtgacacgt |
202 |
Q |
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| T |
37768330 |
ctaattaattacctgaatgatgagccagattgagaaacagaagcaactgagtaagacacatagaacacctaacaattcagtggtagtatcagtgacatgt |
37768429 |
T |
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| Q |
203 |
tccgtgtggtcgttctttggatccaaaagattgattgcaaaaggccaaatatcaaattctactcctttgtaaaatgtcaacaccaa |
288 |
Q |
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| T |
37768430 |
tccgtgtggtcgttctttggatccaaaatattgattgcaaaaggccaaatatcaaattctactcctttgtaaaatgtcaacaccaa |
37768515 |
T |
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