View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_13 (Length: 468)
Name: NF8548A_low_13
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 49294341 - 49294196
Alignment:
| Q |
6 |
tttggtgttttattcacacataaagtaaatgaggcaattaaactataatgtgatatagaaggtgtttaaattagtatgagaaccttgaatgcagagatgt |
105 |
Q |
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| T |
49294341 |
tttggtattttactcacacataaagtaaatgaggcaattaaactataatgtgatatagaaggtgtttaaattagcatgagaaccttgaatgcagagatat |
49294242 |
T |
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| Q |
106 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
151 |
Q |
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| T |
49294241 |
catcacaatgtaaaagcccattcaacctaacctgcaaaaatccatg |
49294196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 362 - 463
Target Start/End: Complemental strand, 49293975 - 49293874
Alignment:
| Q |
362 |
ttaagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaa |
461 |
Q |
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| T |
49293975 |
ttaagtatatgtagatgtgtgaggaaaacataccgcaagcttgccggagccacggggaccgagaagaagaatagaattgttgcatgcttcagcgacggaa |
49293876 |
T |
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| Q |
462 |
gt |
463 |
Q |
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|| |
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| T |
49293875 |
gt |
49293874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 49294116 - 49294033
Alignment:
| Q |
221 |
ggaggcaaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
304 |
Q |
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| T |
49294116 |
ggaggcaaggaattaaaaattgaattgaataccactgaaatggagtctggatattgaatcaacaaatcttgaagaactagatcc |
49294033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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