View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_130 (Length: 287)
Name: NF8548A_low_130
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_130 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 24211103 - 24210822
Alignment:
| Q |
1 |
attcaactttggatgagataaagaattggatgaaagagtgggaaccatggatggttatagttaagattttccaacaagttcacactctttgtttcaacta |
100 |
Q |
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| T |
24211103 |
attcaactttggatgagataaagaattggatgaaagagtgggaaccatggatggttatagttaagattttccaacaagttcacactctttgtttcaacta |
24211004 |
T |
|
| Q |
101 |
tagaacatgttttttggtttgtgagacattaacatagtaatgtttatctttggctttggaccgttaatctagtttggtgtttgtgggaattatcttgaat |
200 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24211003 |
tagaacatgttttttggtttgtgaaacataaacatagtaatgtttatctttggctttggaccgttaatctagtttggtgtttgtgggaattatcttgaat |
24210904 |
T |
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| Q |
201 |
agaagaggtaagctagatgtagcgaattggatttagccacgtaatcagagtttatccattgaagaaatattgaacaccaaac |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24210903 |
agaagaggtaagctagatgtagcgaattggatttagccacgtaatcagagtttatccattgaagaaatattgaacaccaaac |
24210822 |
T |
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