View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_132 (Length: 285)
Name: NF8548A_low_132
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_132 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 21831747 - 21832008
Alignment:
| Q |
21 |
cttggtatccaagtgccctcctcgaaagcgatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831747 |
cttggtatccaagtgccctcctcgaaagccatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
21831846 |
T |
|
| Q |
121 |
ctacaaagnnnnnnnnnnnnnnnngcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaact |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831847 |
ctacaaagttttttttttttt---gcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaact |
21831943 |
T |
|
| Q |
221 |
tgttttgttgataccatatttgatgtaagagacgaatgctgattatcatgaaattatgcatccta |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831944 |
tgttttgttgataccatatttggtgtaagagacgaatgctgattatcatgaaattatgcatccta |
21832008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University