View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_135 (Length: 279)
Name: NF8548A_low_135
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 30315770 - 30316047
Alignment:
| Q |
1 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
100 |
Q |
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| T |
30315770 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatg |
30315869 |
T |
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| Q |
101 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatga |
200 |
Q |
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| T |
30315870 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccaccttttgtactatga |
30315969 |
T |
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| Q |
201 |
ataaattaatcaagaataagttttgtgccacctctcttgctacta-nnnnnnnctcataatactcatctatgctacta |
277 |
Q |
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| T |
30315970 |
ataaattaatcaagaataagttttgtgccacctctcttactactattttttttctcataatactcatctatgctacta |
30316047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 30304904 - 30305147
Alignment:
| Q |
1 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304904 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
30305003 |
T |
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| Q |
101 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatga |
200 |
Q |
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| T |
30305004 |
ttatgcaagtatgatatatggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacc-tttctactatga |
30305102 |
T |
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| Q |
201 |
ataaattaatcaagaataagttttgtgccacctctcttgctacta |
245 |
Q |
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|||| | |||||||||||||||||| ||||||||||||||||||| |
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| T |
30305103 |
ataactgaatcaagaataagttttgagccacctctcttgctacta |
30305147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30287236 - 30287462
Alignment:
| Q |
1 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287236 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatg |
30287335 |
T |
|
| Q |
101 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| || ||| |||||||| |
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| T |
30287336 |
ttatgcatgtatgctgtaaggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcc-tttctactatga |
30287428 |
T |
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| Q |
201 |
ataaattaatcaagaataagttttgtgccacctc |
234 |
Q |
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| T |
30287429 |
ataaattaatcaagaataagttttgtgcctcctc |
30287462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 30300112 - 30300349
Alignment:
| Q |
1 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
30300112 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaata |
30300211 |
T |
|
| Q |
101 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatga |
200 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| || ||||||||||||| ||| || |||| |
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| T |
30300212 |
ttatgcttgtatgctgtaaggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacc-tttccaccatga |
30300304 |
T |
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| Q |
201 |
ataaattaatcaagaataagttttgtgccacctctcttgctacta |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30300305 |
ataaattaatcaagaataagttttgtgccacctctcttactacta |
30300349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30292270 - 30292485
Alignment:
| Q |
1 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| || |
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| T |
30292270 |
atgctcagcctcaacaaagggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatg--------ctta |
30292361 |
T |
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| Q |
101 |
ttatgcatgtatgctgtaaggaactatagctcatagtgagcaaagaataaaacgtcattatcttgtaactataactagagttccaccttttgtactatga |
200 |
Q |
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|||||| |||||||| || |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |
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| T |
30292362 |
ttatgcttgtatgctcta---------agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttcca-ctttcctactatga |
30292451 |
T |
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| Q |
201 |
ataaattaatcaagaataagttttgtgccacctc |
234 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
30292452 |
ataaattaatcaagaacaagttttgtgccacctc |
30292485 |
T |
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