View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_136 (Length: 279)

Name: NF8548A_low_136
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_136
NF8548A_low_136
[»] chr1 (2 HSPs)
chr1 (7-264)||(18312856-18313113)
chr1 (148-237)||(43346831-43346920)
[»] chr8 (2 HSPs)
chr8 (145-267)||(7493687-7493806)
chr8 (148-235)||(21138314-21138401)
[»] chr2 (3 HSPs)
chr2 (149-234)||(30934144-30934229)
chr2 (148-202)||(21534689-21534743)
chr2 (147-196)||(8755039-8755088)
[»] chr4 (4 HSPs)
chr4 (145-221)||(9744754-9744830)
chr4 (148-211)||(13901179-13901242)
chr4 (147-249)||(43719683-43719785)
chr4 (161-202)||(34979239-34979280)
[»] chr7 (2 HSPs)
chr7 (181-240)||(20909308-20909367)
chr7 (156-221)||(2916533-2916598)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 18313113 - 18312856
Alignment:
Q  7 gttcagtgttcaataacagttaactatcgttcgtgccattttcacgtataaggcaagccagctccacctcactttgcattcacttagtttttctttcatc 106  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  18313113 gttcagtgttcaataacagttaactatcattcgtgacattttcacgtataaggcaagccagctccacctcactttgcattcacctagtttttcttccatc 18313014  T
Q  107 ttccatcnnnnnnnctcaaattttgatttannnnnnnngcaaaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaac 206  Q
    |||||||       ||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18313013 ttccatcaaaaaaactcaaattttgatttatattttttgcaaaatcttggtctcaaattattgaagaaggattgctagaaggtttctacatacattgaac 18312914  T
Q  207 gtcaaacaacatgtaatgaatgttttaacacatttgcattgttgttgttttctgccat 264  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18312913 gtcaaacaacatgtaatgaatgttttaacacatttacattgttgttgttttctgccat 18312856  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 43346831 - 43346920
Alignment:
Q  148 aaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaacac 237  Q
    |||||||||| || ||| |||| ||||||||| |||||||||||||||| | |||   ||||||  |||| |||||| || |||||||||    
T  43346831 aaatcttggtttctaatcattggagaaggattgctagaaggtttctacacatatttggcgtcaacaaacaagtaatgcatcttttaacac 43346920  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 7493687 - 7493806
Alignment:
Q  145 gcaaaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaacacatttgca 244  Q
    |||||||||||||||||||| ||| |||||   || ||| ||| ||||||||  |||| ||||||||  ||| ||||||| || ||||||||||||| ||    
T  7493687 gcaaaatcttggtctcaaatcatttaagaa---ttgctaaaagatttctacactcatttaacgtcaagaaacgtgtaatgcatcttttaacacatttaca 7493783  T
Q  245 ttgttgttgttttctgccatatt 267  Q
    |||||  | | ||||||||||||    
T  7493784 ttgttcctttattctgccatatt 7493806  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 21138314 - 21138401
Alignment:
Q  148 aaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaac 235  Q
    |||||||||| |||||| |||| |||| |||| |||||||||||||||| |||||  || ||||  |||| |||||| || |||||||    
T  21138314 aaatcttggtttcaaatcattggagaaagattgctagaaggtttctacacacatttgacatcaagaaacaagtaatgcatcttttaac 21138401  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 30934144 - 30934229
Alignment:
Q  149 aatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaa 234  Q
    |||||| ||||||||| ||||||||||||||  |||| |||||||||| ||||| || |||||| ||||  ||||| || ||||||    
T  30934144 aatctttgtctcaaatcattgaagaaggattgttagatggtttctacacacatttaatgtcaaaaaacagataatgtatattttaa 30934229  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21534689 - 21534743
Alignment:
Q  148 aaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacatt 202  Q
    ||||||||| ||||||| | || ||||||||| |||||||||||||||| |||||    
T  21534689 aaatcttggactcaaatcaatggagaaggatttctagaaggtttctacacacatt 21534743  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 8755039 - 8755088
Alignment:
Q  147 aaaatcttggtctcaaattattgaagaaggattcctagaaggtttctaca 196  Q
    ||||| ||| |||||||| |||| ||||||||| ||||||||||||||||    
T  8755039 aaaattttgatctcaaatcattggagaaggattgctagaaggtttctaca 8755088  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 9744754 - 9744830
Alignment:
Q  145 gcaaaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgta 221  Q
    ||||||||||| |||||||| |||| ||||||||| ||||||  ||||||||  |||| ||||||||  ||||||||    
T  9744754 gcaaaatcttgatctcaaataattggagaaggattgctagaatatttctacactcatttaacgtcaataaacatgta 9744830  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 13901242 - 13901179
Alignment:
Q  148 aaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaa 211  Q
    |||||||||| |||||| |||| |||| |||| |||||||||||||||| |||||  |||||||    
T  13901242 aaatcttggtttcaaatcattggagaatgattgctagaaggtttctacacacatttgacgtcaa 13901179  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 43719785 - 43719683
Alignment:
Q  147 aaaatcttggtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaacacatttgcatt 246  Q
    |||||| | ||||||||| ||||||||||||||  |||||| ||||||||| |||  ||||||||  || || ||||| || ||||||| | ||| ||||    
T  43719785 aaaatcctagtctcaaatcattgaagaaggattgttagaagatttctacattcatctaacgtcaacaaatatataatgcatcttttaacccgtttacatt 43719686  T
Q  247 gtt 249  Q
    |||    
T  43719685 gtt 43719683  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 34979239 - 34979280
Alignment:
Q  161 aaattattgaagaaggattcctagaaggtttctacatacatt 202  Q
    |||| |||||||||||||| |||||||||||||||| |||||    
T  34979239 aaatcattgaagaaggattgctagaaggtttctacacacatt 34979280  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 20909367 - 20909308
Alignment:
Q  181 ctagaaggtttctacatacattgaacgtcaaacaacatgtaatgaatgttttaacacatt 240  Q
    |||||||||||||||| |||||  |||||||| |||| | ||||||| ||||||||||||    
T  20909367 ctagaaggtttctacacacatttgacgtcaaaaaacaaggaatgaatcttttaacacatt 20909308  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 2916598 - 2916533
Alignment:
Q  156 gtctcaaattattgaagaaggattcctagaaggtttctacatacattgaacgtcaaacaacatgta 221  Q
    ||||||||| |||||||||||| | |||||||||||||| || ||||  |||||||  ||||||||    
T  2916598 gtctcaaatcattgaagaaggaatgctagaaggtttctatattcatttgacgtcaagaaacatgta 2916533  T

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