View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_14 (Length: 466)
Name: NF8548A_low_14
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_14 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 3 - 466
Target Start/End: Original strand, 16465 - 16928
Alignment:
| Q |
3 |
attactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaa |
102 |
Q |
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| T |
16465 |
attactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaa |
16564 |
T |
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| Q |
103 |
ttgaattgttgttgttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgt |
202 |
Q |
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| T |
16565 |
ttgaattgttgttgttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgt |
16664 |
T |
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| Q |
203 |
ttgcgctattgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtattatgcccattgtcgtgacttggttgttttaaagcatattg |
302 |
Q |
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| T |
16665 |
ttgcgctactgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtattatgcccattgtcgtgacttggttgttttaaagcatattg |
16764 |
T |
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| Q |
303 |
gtagagttttcttcatagcagtggaaattgtactcaattaaagactccaactataacaggtttcgtttcttttccttttacctttaatatgagttcatta |
402 |
Q |
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| T |
16765 |
gtagagttttcttcatagcagtggaaattgtactcaattaaagactccaactataacaggtttcgtttcttttccttttacctttaatatgagttcatta |
16864 |
T |
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| Q |
403 |
gagttaactttagattataatttagctatgtctgagtagnnnnnnnatagagtccggaatgtga |
466 |
Q |
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| T |
16865 |
gagttaaatttagattataatttagctatgtttgagtagtttttttatagagtccggaatgtga |
16928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 11177501 - 11177266
Alignment:
| Q |
3 |
attactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaa |
102 |
Q |
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| T |
11177501 |
attactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaa |
11177402 |
T |
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| Q |
103 |
ttgaattgttgttgttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgt |
202 |
Q |
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| T |
11177401 |
ttgaattgttgttgctgg------------------gctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgt |
11177320 |
T |
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| Q |
203 |
ttgcgctattgtttggtgtttggtgttcgattccaattgcagttatgtttcttg |
256 |
Q |
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| T |
11177319 |
ttgcgctactgtttggtgtttggtgttcgatttcaattgcagttatgtttcttg |
11177266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 11177268 - 11177157
Alignment:
| Q |
330 |
ttgtactcaattaaagactccaactataacaggtttcgtttcttttccttttacctttaatatgagttcattagagttaactttagattataatttagct |
429 |
Q |
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| T |
11177268 |
ttgtactcaattaaagactacaactataacaggtttcgtttcttttccttttacctttaatatgagttcattagagttaaatttagattataatttagtt |
11177169 |
T |
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| Q |
430 |
atgtctgagtag |
441 |
Q |
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| T |
11177168 |
atgtctgagtag |
11177157 |
T |
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