View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_142 (Length: 277)
Name: NF8548A_low_142
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_142 |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: scaffold0684 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 126 - 276
Target Start/End: Complemental strand, 3968 - 3818
Alignment:
| Q |
126 |
ttttattaattaactaaactttatgaaagcgcttttttccatggtagagctgtaaaagggtagtaattaagataccgcttttctcttttagcgtcgtcta |
225 |
Q |
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| T |
3968 |
ttttattaattaactaaactttatgaaagcgcttttatccatggtagagctgtaaaagggtagtaattaagataccgcttttctcttttagcgtcgtcta |
3869 |
T |
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| Q |
226 |
agggttccatgttctttccaacaaaagggaaacaatgaaccccagcccgcg |
276 |
Q |
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| T |
3868 |
aaggttccatgttctttccaacaaaagggaaacaacgaacagcagcccgcg |
3818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 4150 - 4300
Alignment:
| Q |
126 |
ttttattaattaactaaactttatgaaagcgcttttttccatggtagagctgtaaaagggtagtaattaagataccgcttttctcttttagcgtcgtcta |
225 |
Q |
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| T |
4150 |
ttttattaattaactaaactttatgaaagcgcttttatccatggtagagctgtaaaagggtagtaattaagataccgcttttctcttttagcgtcgtcta |
4249 |
T |
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| Q |
226 |
agggttccatgttctttccaacaaaagggaaacaatgaaccccagcccgcg |
276 |
Q |
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| T |
4250 |
aaggttccatgttctttccaacaaaagggaaacaacgaacagcagcccgcg |
4300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 11441904 - 11441781
Alignment:
| Q |
8 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacagatgtattgaaagcttgttcttgtcggttcgtgcggnnnnnnnatcg |
107 |
Q |
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| T |
11441904 |
agacggtgcttgcggcttttatgaaggtgctggccaagagacgtgtaaacacagatgtgttgaaagcttgttcgtgtgggttcgtgcggtttttttatcg |
11441805 |
T |
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| Q |
108 |
tgtgatatagcaacgctcttttat |
131 |
Q |
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| T |
11441804 |
tgcgatatagcaacgctcttttat |
11441781 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 47656493 - 47656579
Alignment:
| Q |
8 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacagatgtattgaaagcttgttcttgtcggttcgtgc |
94 |
Q |
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| T |
47656493 |
agacggtgcttgcggcttttatgaaggtgctggtcaagagacgtgtaagcacagatgtgttgaaagcttgttcgtgtgggttcgtgc |
47656579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 54922938 - 54923013
Alignment:
| Q |
4 |
gcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacagatgtattgaaagcttgttc |
80 |
Q |
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| T |
54922938 |
gcgaagacggtgcttgcgtcttttatgacggtgctagccaagagacgtgtacgcacagatgtgttg-aagcttgttc |
54923013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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