View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_145 (Length: 272)

Name: NF8548A_low_145
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_145
NF8548A_low_145
[»] chr8 (13 HSPs)
chr8 (1-253)||(3398561-3398813)
chr8 (7-254)||(3391583-3391830)
chr8 (7-247)||(3364083-3364323)
chr8 (7-254)||(3407370-3407617)
chr8 (7-250)||(31175758-31176001)
chr8 (7-251)||(3314768-3315012)
chr8 (7-247)||(3286562-3286802)
chr8 (16-250)||(3262682-3262916)
chr8 (106-236)||(3375003-3375133)
chr8 (7-245)||(3325047-3325285)
chr8 (106-248)||(7164798-7164941)
chr8 (106-237)||(13808629-13808760)
chr8 (7-254)||(3267245-3267492)
[»] chr5 (5 HSPs)
chr5 (7-263)||(20838530-20838786)
chr5 (7-263)||(20812175-20812431)
chr5 (7-254)||(15802818-15803065)
chr5 (88-254)||(12599180-12599346)
chr5 (10-254)||(30417727-30417971)
[»] chr3 (6 HSPs)
chr3 (7-254)||(6905853-6906100)
chr3 (7-254)||(32411130-32411374)
chr3 (136-182)||(47986908-47986954)
chr3 (136-182)||(47996195-47996241)
chr3 (136-182)||(48005482-48005528)
chr3 (136-182)||(48014767-48014813)
[»] scaffold0468 (1 HSPs)
scaffold0468 (7-263)||(6193-6449)
[»] chr2 (1 HSPs)
chr2 (6-254)||(14766993-14767241)
[»] chr7 (2 HSPs)
chr7 (108-254)||(8371807-8371953)
chr7 (136-182)||(36213885-36213931)
[»] chr6 (9 HSPs)
chr6 (136-184)||(5447564-5447612)
chr6 (136-182)||(5344840-5344886)
chr6 (115-184)||(5383303-5383372)
chr6 (132-181)||(5396930-5396979)
chr6 (136-184)||(5128473-5128521)
chr6 (96-184)||(5425887-5425975)
chr6 (136-184)||(5447134-5447182)
chr6 (136-203)||(5181983-5182050)
chr6 (136-184)||(5434012-5434060)
[»] chr4 (2 HSPs)
chr4 (137-184)||(4133480-4133527)
chr4 (136-184)||(4335322-4335370)
[»] scaffold0294 (1 HSPs)
scaffold0294 (136-184)||(8956-9004)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 3398561 - 3398813
Alignment:
Q  1 tcagacgataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaa 100  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  3398561 tcagacgataatcctttatatccacatagagatatatatgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacaccagtatttgctgcaa 3398660  T
Q  101 ttagagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |||| |||||    
T  3398661 ttagagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttgaacaaccagaaataatgagagttttcactgatttcaattgata 3398760  T
Q  201 gatctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398761 gatctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaa 3398813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 3391583 - 3391830
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||| ||   ||||||||| ||||||||| |||| |||||||    
T  3391583 gataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccattagag 3391682  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||| | |||| |||||||||||    
T  3391683 ttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactgttctcaattgatagatctc 3391782  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    |||||||||||||  |||||| ||||||||| ||||||||| ||||||    
T  3391783 tcttgggagattgctaagactcgtacagtccttcaaatttaacagaag 3391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 3364323 - 3364083
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||| ||   ||||||||| ||||||||| |||| |||||||    
T  3364323 gataatccttcatatccacatagagatatatatccaatgctttttgatctcactatcgaaaatggtggttgtttgactccagtatttgctgccattagag 3364224  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||  | |||| |||||||||||    
T  3364223 ttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaaccagaaaggatgagagtttccactcttctcaattgatagatctc 3364124  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaattta 247  Q
    ||||||||||||| ||||||| ||||||||| |||||||||    
T  3364123 tcttgggagattgccaagactcgtacagtccttcaaattta 3364083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 3407370 - 3407617
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    |||||||||| ||||||||||||||||||||  |  ||| | ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  3407370 gataatccttgatatccacatagagatatatgggtgatgttctttgatctaacaatcgaaaaaggcacttgtttgacaccagcattttctgcaattagag 3407469  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    |||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||||| ||||  ||||||||||    
T  3407470 ttgtcaaggatttcatttgcactatatcttcttccaatttgacaatctttgaacaaccagaaaggatgagagttttcactgatctcaatcgatagatctc 3407569  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    ||||||||||||  ||||||||| ||| ||| |||||||||| |||||    
T  3407570 tcttgggagattaacaagacttgcacaatccttcaaatttatgagaag 3407617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 31176001 - 31175758
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  | || ||| | || ||||||||||  ||||||||| ||||||||| ||    
T  31176001 gataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattaaag 31175902  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||| |||  | ||||| |||    
T  31175901 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatcattgaacaaccagaaagaatgagacttttcactgatctcactttatagacctc 31175802  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatca 250  Q
    | ||||||||||| ||||||||||||||||| | ||||||||||    
T  31175801 ttttgggagattgccaagacttgtacagtccttaaaatttatca 31175758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 3315012 - 3314768
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||| ||||||||| ||||||| ||||||||  ||||| |||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||| |    
T  3315012 gataaaccttcatattcacatagggatatatatccaatgttttttgatttaacaatcgaaaaaggaacttgtttgacaccagtttttgctgcaattaggg 3314913  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    ||||||| |||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||| |||| |||||||||||    
T  3314912 ttgtcaatgatttcatttgcactatatcttcttccaatttttcaatctttgaacaaccagaaagaatgaaagttttcaccgatgtcaattgatagatctc 3314813  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcag 251  Q
    ||||||||||||   |||||||||||||||| | |||||||||||    
T  3314812 tcttgggagatttctaagacttgtacagtccttgaaatttatcag 3314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 3286562 - 3286802
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||||||||| ||||||||    |||||||||||||| ||||| ||||| || |||| ||| ||  | ||||| | |||||| || |    
T  3286562 gataatccttcatatccacatagggatatatatctgatgctttttgatcttacaattgaaaagggcacttctttaacagctgtattatttgcaatcagtg 3286661  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagat-ct 205  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||| ||||||||||||| || ||||| ||||  ||| |||  |||||||| ||    
T  3286662 ttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaacaaccagaaaggatgagagtgttcaaagatttcagttgatagatact 3286761  T
Q  206 ctcttgggagattggcaagacttgtacagtccctcaaattta 247  Q
    || |||||||||||  ||||| | |||||||| |||||||||    
T  3286762 ct-ttgggagattgctaagacctatacagtccttcaaattta 3286802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3262682 - 3262916
Alignment:
Q  16 tcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagagttgtcaagg 115  Q
    |||||||||||||| ||||||||  |||||||||||||||| || || ||| | || || | ||| || || ||||  | |||||| || ||||||||||    
T  3262682 tcatatccacatagggatatatatccaatgctttttgatcttactattgaatagggcacctctttcacacctgtatcctttgcaatcagtgttgtcaagg 3262781  T
Q  116 attccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctctcttgggag 215  Q
    ||||||| |||| ||| |||||||||||||||||||||||| | ||||||||||| || ||||||||||  ||| |||| || || || |   |||||||    
T  3262782 attccatctgcactatgtcttcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttcaattggtatatattctttgggag 3262881  T
Q  216 attggcaagacttgtacagtccctcaaatttatca 250  Q
    |||   ||||||| |||||||| ||||||||||||    
T  3262882 attttgaagacttctacagtccttcaaatttatca 3262916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 3375133 - 3375003
Alignment:
Q  106 gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatct 205  Q
    ||||||||||||||||| |||| ||| ||||||||||| |||| ||||||| ||||||||||||| |||||||||||||    | ||||||||||||||     
T  3375133 gttgtcaaggattccatctgcattatgtcttcttccaacttgttaatctttgaacaaccagaaagtataagagttttcaaaagtttcaaatgatagatca 3375034  T
Q  206 ctcttgggagattggcaagacttgtacagtc 236  Q
    | ||||||||||||| |||||||||||||||    
T  3375033 cccttgggagattggtaagacttgtacagtc 3375003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 3325047 - 3325285
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    |||| ||||||||||||||| || ||||||||  ||||||||||| |||| |  || ||| ||||||||||||| ||    |||| ||  ||||| || |    
T  3325047 gatagtccttcatatccacagagggatatatatccaatgctttttaatcttagtattgaataaggaacttgttttacagatgtatctttagcaatcagcg 3325146  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    |||||||||||||||| |||   | | |||||||||| |||||||||||| |||||||||| |  |||||||||| ||  ||| |||| |||||||||||    
T  3325147 ttgtcaaggattccatctgcccgaaaccttcttccaacttgtcaatctttgaacaaccagataatataagagtttccaaagatttcaattgatagatctc 3325246  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatt 245  Q
     | |||||||||   |||||||| ||||||| |||||||    
T  3325247 ccctgggagatttctaagacttgcacagtccttcaaatt 3325285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 7164798 - 7164941
Alignment:
Q  106 gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaa-atgatagatc 204  Q
    ||||||||||||| ||| |||| ||| ||||||||||| | | |||||||| ||||||||||||| || |||||||||| |||| ||||  ||||||||     
T  7164798 gttgtcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaacaaccagaaaggatgagagttttcaatgatttcaacttgatagata 7164897  T
Q  205 tctcttgggagattggcaagacttgtacagtccctcaaatttat 248  Q
    |  ||||||||||||  |||||||||||||||| ||||||||||    
T  7164898 ttccttgggagattgctaagacttgtacagtccttcaaatttat 7164941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 13808760 - 13808629
Alignment:
Q  106 gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatct 205  Q
    ||||||||||||||||| || | ||| ||||||||||| |||||||||||| ||||||||||||  || |||||||||| |||| |||| ||||| |||     
T  13808760 gttgtcaaggattccatctggactatgtcttcttccaacttgtcaatctttgaacaaccagaaaagattagagttttcaatgatttcaactgatatatca 13808661  T
Q  206 ctcttgggagattggcaagacttgtacagtcc 237  Q
    |   ||||||| ||||||||||||||||||||    
T  13808660 cctctgggagactggcaagacttgtacagtcc 13808629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 3267245 - 3267492
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||||||||||||||||||  | ||||||||  |||| || |  ||| | || || | ||| || || |||| || |   |  || |    
T  3267245 gataatccttcatatccacatagagatatatatccgatgcttttcaatcttaccactgaatacggcacctctttcacacctgtatcttttatgaccagtg 3267344  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    |||| ||||||||||| |||| |||  ||||||| || |||||||||||| ||||||||||||  || |||||| |||  ||  |||| ||||  ||||     
T  3267345 ttgttaaggattccatctgcactatgccttcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattgatttatctt 3267444  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
      |||||||||||  |||||||||||| ||  ||||||||||||||||    
T  3267445 ctttgggagattgctaagacttgtacaatctttcaaatttatcagaag 3267492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 20838786 - 20838530
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||  | || ||| | || ||||||||||  ||||||||| ||||||||||||    
T  20838786 gataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattagag 20838687  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
     |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  20838686 ctgtcaaggattccatttgcattatatcttcttccaatttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaattgatagatctc 20838587  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggattttctt 263  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  20838586 tcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattctt 20838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 20812431 - 20812175
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||||||  | || ||| | || ||||||||||  ||||||||| ||||||||||||    
T  20812431 gataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatagggcacttgtttgataccagtatttgctgcaattagag 20812332  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
     |||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||    
T  20812331 ctgtcaaggattccatttgcattatatcttcttccaacttctcaatctttgaacaaccagaaagaataagagttttcaccgatatcaatttatagatctc 20812232  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggattttctt 263  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  20812231 tcttgggagattggcaagacttttacagtccctcaaatttatcagaacgatattctt 20812175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 15803065 - 15802818
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| || ||||||||||| ||||||||||| | ||||||| |||| |||||||    
T  15803065 gataatcctttatatccacatagagatatatatccaatgctttttgatctgacgatcgaaaaaggcacttgtttgactctagtatttgctgccattagag 15802966  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    || |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| || ||||||||||||| | |||| |||||||||||    
T  15802965 ttttcaaggattccatttgcaatatatcttcgtctaatttgtcaatctttgaacaaccagaaaggatgagagttttcactgttctcaattgatagatctc 15802866  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    |||||||||||||  |||||| ||||||||| ||||||||||||||||    
T  15802865 tcttgggagattgctaagactcgtacagtccttcaaatttatcagaag 15802818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 12599180 - 12599346
Alignment:
Q  88 gtattttctgcaattagagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactg 187  Q
    |||||||  ||||| || ||||||||||||||||| || | ||| ||||||||||| |||  ||||||| ||||||||||||| |||||||||||||  |    
T  12599180 gtatttttggcaatcagtgttgtcaaggattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagtataagagttttcaaag 12599279  T
Q  188 atatcaaatgatagatctctcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
     | |||| ||||||||||| | ||||||||||| |||||||||||||||| | ||||| | ||||||    
T  12599280 ttttcaattgatagatctcccgtgggagattggtaagacttgtacagtccttgaaattcaacagaag 12599346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 30417971 - 30417727
Alignment:
Q  10 aatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagagttg 109  Q
    ||||||||| ||||||| || ||||||||  |||||||||| || ||||| || ||||||||  ||| ||  |  |||||  || |||| |||||||||     
T  30417971 aatccttcaaatccacacagggatatataaacaatgcttttcgaactaactatggaaaaaggtgctttttctataccagttcttgctgccattagagttt 30417872  T
Q  110 tcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctctct 209  Q
    ||||||||| |||||||| || ||||||||||||||    ||| ||| ||||||||  ||| || |||||| |||| || ||||| ||| | ||||||||    
T  30417871 tcaaggatttcatttgcactacatcttcttccaattcagtaatgtttgaacaaccatcaagtatgagagttgtcacagacatcaattgagatatctctct 30417772  T
Q  210 tgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    ||| |||||| ||||||||||||| ||| | ||||||||||||||    
T  30417771 tggtagattgccaagacttgtacaatccttaaaatttatcagaag 30417727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 6905853 - 6906100
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||| ||  |||||||||||||||||||| |||||| |||||    
T  6905853 gataatccttcatatccgcatagggatatatacacaatgctttttgatctaacaatggaaaagggtgcttgtttgacgccagtatttgctgcaactagag 6905952  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||  |||||||||||    
T  6905953 ttgtcaaggatttcatttgcactatatcttcctccaatttgtcaatctttgaacaaccaaaaagaatgagagttttcacagatatcagctgatagatctc 6906052  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
     ||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  6906053 ccttggtagattgccaagacttgtacagtccttcaaatttatcagaag 6906100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 32411130 - 32411374
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||| || || ||| | || || | ||| || || |||| || |||||| || |    
T  32411130 gataatccttcatatccacatagagatatatatgcgatgcttttcgatcttactattgaacagggcacctcttttacacctgtatcttttgcaatcagtg 32411229  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    ||||||| ||||||||||||| |||   ||||||||| || ||||||||| ||||||||||||| || ||||||||||  ||| |||| ||||| ||||     
T  32411230 ttgtcaacgattccatttgcactat---ttcttccaagttttcaatctttgaacaaccagaaaggatgagagttttcaaagatttcaattgatatatctt 32411326  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
      |||||||| ||  |||||||||||||||| ||||||||||||||||    
T  32411327 ctttgggagactgttaagacttgtacagtccttcaaatttatcagaag 32411374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 47986908 - 47986954
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    |||||||| |||| |||||||||||| ||||||||||| ||||||||    
T  47986908 tcttccaacttgttaatctttaaacagccagaaagaatgagagtttt 47986954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 47996195 - 47996241
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    |||||||| |||| |||||||||||| ||||||||||| ||||||||    
T  47996195 tcttccaacttgttaatctttaaacagccagaaagaatgagagtttt 47996241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 48005482 - 48005528
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    |||||||| |||| |||||||||||| ||||||||||| ||||||||    
T  48005482 tcttccaacttgttaatctttaaacagccagaaagaatgagagtttt 48005528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 48014767 - 48014813
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    |||||||| |||| |||||||||||| ||||||||||| ||||||||    
T  48014767 tcttccaacttgttaatctttaaacagccagaaagaatgagagtttt 48014813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 6193 - 6449
Alignment:
Q  7 gataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattagag 106  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||  || ||||| ||  ||||||||| |||||||||| |||||| || ||    
T  6193 gataatccttcatatccgcatagggatatatacacaatgctttttgatctaaatatggaaaagggtgcttgtttgatgccagtatttgctgcaactaaag 6292  T
Q  107 ttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctc 206  Q
    | ||||| |||| |||||||| ||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||  |||||||||||    
T  6293 tcgtcaaagatttcatttgcactatatcttcttccaatttgtcgatctttgaacaaccaaaaaggataagagttttcacagatatcagctgatagatctc 6392  T
Q  207 tcttgggagattggcaagacttgtacagtccctcaaatttatcagaaggattttctt 263  Q
     ||||| |||||| ||||||||||||| ||| ||||||| |||||||| || |||||    
T  6393 ccttggtagattgccaagacttgtacaatccttcaaattaatcagaagaatattctt 6449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 14766993 - 14767241
Alignment:
Q  6 cgataatccttcatatccacatagagatatatacgcaatgctttttgatctaacaatcgaaaaaggaacttgtttgacgccagtattttctgcaattaga 105  Q
    ||||||||||||||| |||||||| ||||||||  ||||||||||| |||| |  || ||| | ||||||| ||| |     ||||||  |||||| ||     
T  14766993 cgataatccttcataaccacatagggatatatatccaatgctttttaatcttagtattgaatatggaacttcttttatagatgtatttgttgcaatcagt 14767092  T
Q  106 gttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatct 205  Q
    | ||||||||||||||||||||  ||||||||||||||||||||||||||| |||| || ||||| || ||||||||||  ||| |||| ||||||||||    
T  14767093 gatgtcaaggattccatttgcacaatatcttcttccaatttgtcaatctttgaacagccggaaaggatgagagttttcaaagatttcaattgatagatct 14767192  T
Q  206 ctcttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    |||||||||||||  ||||||||||||||||| |||||||||| |||||    
T  14767193 ctcttgggagattttcaagacttgtacagtccttcaaatttatgagaag 14767241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 8371807 - 8371953
Alignment:
Q  108 tgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagatctct 207  Q
    ||||||||| ||||| |||| ||||||||||||||||||||||||| || |||| || | ||| || ||||||||||| ||| |||| ||||||||||||    
T  8371807 tgtcaaggactccatctgcactatatcttcttccaatttgtcaatcgttgaacagcccgtaaggatgagagttttcaccgatttcaattgatagatctct 8371906  T
Q  208 cttgggagattggcaagacttgtacagtccctcaaatttatcagaag 254  Q
    |||||||||||  ||||| || |||||||| | |||||||| |||||    
T  8371907 cttgggagattttcaagaattatacagtcctttaaatttatgagaag 8371953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 36213885 - 36213931
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  36213885 tcttccaatttgtcaatctttgaacatccagaaagaatgagagtttt 36213931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 5447612 - 5447564
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  5447612 tcttccagcttgtcaatctttaaacaaccagaaagaatgagagttttca 5447564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 5344886 - 5344840
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagtttt 182  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||    
T  5344886 tcttccaacttgtcaatctttaaacaacccgaaagaatgagagtttt 5344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 5383372 - 5383303
Alignment:
Q  115 gattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||||||   ||| || |||||||| |||  |||||||||||||||||||||||| ||||||||||    
T  5383372 gattccatttgttctatgtcctcttccaacttggtaatctttaaacaaccagaaagaatgagagttttca 5383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 5396979 - 5396930
Alignment:
Q  132 atcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttt 181  Q
    ||||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  5396979 atcttcttccaatttgtcaatcagtaaacacccagaaagaagaagagttt 5396930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 5128473 - 5128521
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  5128473 tcttccaacttgtcaatcattatacaaccagaaagaatgagagttttca 5128521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 5425975 - 5425887
Alignment:
Q  96 tgcaattagagttgtcaaggattccatttgcaatatatcttcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||| ||||| || || |||||||||||   ||| || |||||||| ||||||||| ||| ||| ||||||||||| ||||||||||    
T  5425975 tgcaatcagagtggttaaagattccatttgttctatgtcctcttccaacttgtcaatcattacacacccagaaagaatgagagttttca 5425887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 5447182 - 5447134
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||||    
T  5447182 tcttccaccttgtcaatctttaaacaaccagaaagaacgagagttttca 5447134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 5181983 - 5182050
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttcactgatatcaaatgatagat 203  Q
    |||||||| ||||||||| ||||||| ||||||||||| ||||| || | |||| |||||| ||||||    
T  5181983 tcttccaacttgtcaatcattaaacacccagaaagaatgagagtgtttaatgatttcaaattatagat 5182050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 5434060 - 5434012
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||| ||||||||||||||||| |||| ||| || ||||||||||    
T  5434060 tcttccaaattgtcaatctttaaacagccagtaaggatgagagttttca 5434012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 4133480 - 4133527
Alignment:
Q  137 cttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  4133480 cttccaatttgtcaataattaaacagccagaaagaataagagttttca 4133527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 4335370 - 4335322
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||| ||||||||||||||||| || || ||||| ||||||||||    
T  4335370 tcttccaacttgtcaatctttaaacatcctgatagaatgagagttttca 4335322  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 8956 - 9004
Alignment:
Q  136 tcttccaatttgtcaatctttaaacaaccagaaagaataagagttttca 184  Q
    |||||||| ||||||||| ||| ||| ||||||||||| ||||||||||    
T  8956 tcttccaacttgtcaatcattatacacccagaaagaatgagagttttca 9004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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