View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_157 (Length: 264)
Name: NF8548A_low_157
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_157 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 34142470 - 34142215
Alignment:
| Q |
1 |
cactatctccggtgaggtgctcaatcataatgactattaaattaaccgtccctcattgagnnnnnnnatacattattatatagtttatacaattaattga |
100 |
Q |
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| T |
34142470 |
cactatctcctgtgaggtgctcactcataatgactattaaattaaccgtccctctttgagcttgtttatacattattatatagtttatacaattaattga |
34142371 |
T |
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| Q |
101 |
ttttgcctcaaaaactgggtttttggtagcaagattatggttgcaaatgagtagagctagttcaatgatttttgaatgcttgttattttccatctgatca |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142370 |
ttttgcctcacaaactgggtttttggtagcaagattatggttgcaaatgcgtagagctagttcaatgatttttgaatgcttgttattttccatctgatca |
34142271 |
T |
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| Q |
201 |
aatgctaagttgctaacatgttttgcatattgatatttgtggttttcagaacacca |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34142270 |
aatgctaagttgctaacatgttttgcatattgatatttgtggttttcagaacacca |
34142215 |
T |
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