View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_161 (Length: 261)
Name: NF8548A_low_161
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_161 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 22015361 - 22015137
Alignment:
| Q |
21 |
aggtgttccctggattatgtgccagcaggctaatgcacctgatccaattgtatgttttttccttttagctatccacatagttttattcagttaatgtttt |
120 |
Q |
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| T |
22015361 |
aggtgttccctggattatgtgccagcaggctaatgcacctgatccaattgtatgttttttccttttagctatccacatagttttattcagttaatgtttt |
22015262 |
T |
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| Q |
121 |
tctggactatcatctttcnnnnnnnagtaaaaggcaaaagaatagttcgatctgtgcttatcagacggtttcgttttactggattatttatcttcatgat |
220 |
Q |
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| T |
22015261 |
tctggattatcatctttctttttttagtaaaaggcaaaagaatagttcgatctgtgcttatcagacggtttcgttttactggattgtttatcttcatgat |
22015162 |
T |
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| Q |
221 |
agagctatcttaccatgttgatgtc |
245 |
Q |
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||||||||||||||||||||||||| |
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| T |
22015161 |
agagctatcttaccatgttgatgtc |
22015137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 49588209 - 49588253
Alignment:
| Q |
146 |
agtaaaaggcaaaagaatagttcgatctgtgcttatcagacggtt |
190 |
Q |
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| T |
49588209 |
agtaaaaggcgaaagaatagttcgctttgtgcttatcacacggtt |
49588253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 33891641 - 33891597
Alignment:
| Q |
146 |
agtaaaaggcaaaagaatagttcgatctgtgcttatcagacggtt |
190 |
Q |
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| T |
33891641 |
agtaaaaggcgaaagaatagttcgctatgtgcttatcacacggtt |
33891597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 5900574 - 5900530
Alignment:
| Q |
146 |
agtaaaaggcaaaagaatagttcgatctgtgcttatcagacggtt |
190 |
Q |
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|||||||||| ||||||||||||| | ||||||||||| |||||| |
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| T |
5900574 |
agtaaaaggcgaaagaatagttcgctttgtgcttatcacacggtt |
5900530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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