View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_163 (Length: 261)
Name: NF8548A_low_163
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_163 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 40750201 - 40749943
Alignment:
| Q |
1 |
ttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaacctgatgaaacatg |
100 |
Q |
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| T |
40750201 |
ttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaacctgatgaaacatg |
40750102 |
T |
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| Q |
101 |
atcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaagtttggtctttgctcgtgatgaaatcctgcatgtggacta |
200 |
Q |
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| T |
40750101 |
atcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaaatttggtctttgctcatgatgaaatcctgcatgtggacta |
40750002 |
T |
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| Q |
201 |
aactgttgaagattttgaagtccttgagatgatatcaatccatgggccaaactagtttg |
259 |
Q |
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| T |
40750001 |
aattgttgaatattttgaagtccttgagatgatatcaatccatgggccaaactagtttg |
40749943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28495305 - 28495353
Alignment:
| Q |
1 |
ttgaacctatttgagctgctttctgaagaagtgcagtagctgacattgg |
49 |
Q |
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| T |
28495305 |
ttgaacccatttgagctgctttttgcagaagagcagtagctgacattgg |
28495353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 50785489 - 50785528
Alignment:
| Q |
9 |
atttgagctgctttctgaagaagtgcagtagctgacattg |
48 |
Q |
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| T |
50785489 |
atttgagcagctttctgaagaagtgcagttgctgacattg |
50785528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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