View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_172 (Length: 257)

Name: NF8548A_low_172
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_172
NF8548A_low_172
[»] chr2 (1 HSPs)
chr2 (6-245)||(40206977-40207216)
[»] chr4 (3 HSPs)
chr4 (84-206)||(21793780-21793902)
chr4 (84-165)||(4482608-4482689)
chr4 (100-181)||(38487696-38487777)
[»] chr1 (1 HSPs)
chr1 (93-181)||(42796516-42796604)
[»] chr8 (1 HSPs)
chr8 (86-175)||(41037332-41037421)
[»] chr3 (1 HSPs)
chr3 (111-202)||(55220931-55221022)
[»] chr7 (1 HSPs)
chr7 (90-203)||(40835126-40835239)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 40206977 - 40207216
Alignment:
Q  6 atttaatcaacaaaacaaccataagtcacaaactaaattaagaaaactaataatcccaaaaaagtgattaatttgatacttacaggaacatgggaatccc 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40206977 atttaatcaacaaaataaccataagtcacaaactaaattaagaaaactattaatcccaaaaaagtgattaatttgatacttacaggaacatgggaatccc 40207076  T
Q  106 tagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207077 tagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatc 40207176  T
Q  206 agaaacagtgttaactcctcctttgtacctgttgtagtat 245  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40207177 agaaacagtgttaactcctcctttgtacctgttgtagtat 40207216  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 21793902 - 21793780
Alignment:
Q  84 cttacaggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaag 183  Q
    ||||||||||||||||| ||||||||  | |||||||||||||| |||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||    
T  21793902 cttacaggaacatgggagtccctagcgttcctcttaggatcagtggcagagaagacagtgtagacaagaacaaaggtaccaatgatttcagcacctaaag 21793803  T
Q  184 cagtgcctttgctgtaaccatca 206  Q
    | ||||||||| |||| ||||||    
T  21793802 ctgtgcctttgttgtagccatca 21793780  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 4482608 - 4482689
Alignment:
Q  84 cttacaggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaa 165  Q
    ||||||||||||||||| || || ||| ||||||| | ||||||||||||||| |||||||| || | |||||| |||||||    
T  4482608 cttacaggaacatgggagtctcttgcatttctcttggcatcagtagcagagaagacagtgtaaacaagaacaaatgtaccaa 4482689  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 38487696 - 38487777
Alignment:
Q  100 aatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaa 181  Q
    |||| |||||| |||||||||||| | |||||||||| | |||||| ||||| |||||||||||||| || ||| |||||||    
T  38487696 aatctctagcatttctcttaggataaatagcagagaacaaagtgtataccaatacaaaggtaccaatgatctcaacacctaa 38487777  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 42796604 - 42796516
Alignment:
Q  93 acatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaa 181  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  42796604 acatgtgaatctctagcacttctcttaggatcagtggcagagaaaacggtgtaaaccaaaacaaaggtaccaacaatctcagcacctaa 42796516  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 41037421 - 41037332
Alignment:
Q  86 tacaggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagc 175  Q
    |||||||||||| || || |||||| ||||||| | ||||||||||||||||||||||||||| | |||||||||||||| ||| |||||    
T  41037421 tacaggaacatgagagtctctagcatttctcttggcatcagtagcagagaaaacagtgtagacaagaacaaaggtaccaacaatctcagc 41037332  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 55221022 - 55220931
Alignment:
Q  111 cttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaacc 202  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||||| || || || |||||||||||||  |||| |||||||||||||||    
T  55221022 cttctcttggggtcagtagcagagaaaacagtgtaaaccaacacaaaagttccgatcatttcagcacctagggcagagcctttgctgtaacc 55220931  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 40835126 - 40835239
Alignment:
Q  90 ggaacatgggaatccctagcacttctcttaggatcagtagcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgc 189  Q
    |||||||| || || |||||| |||| || ||||| || |||||||| || ||||| || | ||||||||| ||||| ||||||||||||||  |||| |    
T  40835126 ggaacatgagagtctctagcatttcttttgggatctgtggcagagaacacggtgtaaacaagaacaaaggttccaattatttcagcacctaacccagttc 40835225  T
Q  190 ctttgctgtaacca 203  Q
    ||||||| ||||||    
T  40835226 ctttgctataacca 40835239  T

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