View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_179 (Length: 253)
Name: NF8548A_low_179
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_179 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27491859 - 27491622
Alignment:
| Q |
1 |
tggtattacacgtgacctaacgaaacatcccacaaagcctcagaaacatatccacaatgtgtatcttcacatgtgttacacacatttgtatcattattca |
100 |
Q |
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| T |
27491859 |
tggtattacacgtgacctaacgaaacatcccacaaagcctcagaaacatatccacaatgtgtatcttcacatgtgttacacacatttgtatcattattca |
27491760 |
T |
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| Q |
101 |
gtaggaaatctctttgaaaatcaacaagtattaaacttattgaagagatcatgaagaatagagatcctcagataatagttgataccatatcccaattgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27491759 |
gtaggaaatctctttgaaaatcaacaagtattaaacttattgaagagatcatgaagaatagagatcctcagataatagttgataccatatcccaattgct |
27491660 |
T |
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| Q |
201 |
gacacatgatacaattgtatcatgctctttttgaaaat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27491659 |
gacacatgatacaattgtatcatgctctttttgaaaat |
27491622 |
T |
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