View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_18 (Length: 438)

Name: NF8548A_low_18
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_18
NF8548A_low_18
[»] chr6 (2 HSPs)
chr6 (28-421)||(663602-664000)
chr6 (189-417)||(908100-908328)
[»] chr7 (4 HSPs)
chr7 (84-149)||(44172879-44172944)
chr7 (80-139)||(36314626-36314685)
chr7 (148-176)||(21686204-21686232)
chr7 (74-130)||(38134414-38134470)
[»] chr3 (1 HSPs)
chr3 (79-148)||(8039206-8039275)
[»] chr2 (1 HSPs)
chr2 (190-241)||(44605137-44605188)
[»] chr4 (2 HSPs)
chr4 (79-141)||(18513238-18513300)
chr4 (114-154)||(22402419-22402459)
[»] chr1 (1 HSPs)
chr1 (76-154)||(43328464-43328542)
[»] chr5 (1 HSPs)
chr5 (93-141)||(19625928-19625976)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 28 - 421
Target Start/End: Complemental strand, 664000 - 663602
Alignment:
Q  28 taattagctttgaagaatgaacacctgatacaatatggacattgcaatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 127  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  128 tgttagtgttgtgtt-----agtgtcagacacacctttgattagaagtgtcgattctaacaccatttataattcgagaaaaagacatatttcaatgaaat 222  Q
    |||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  223 tacatgtgtcggtgttagatacttacatgcattgtacatttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 322  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  323 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 663602  T

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Target: chr6; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 189 - 417
Target Start/End: Original strand, 908100 - 908328
Alignment:
Q  189 tataattcgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacatttggcacacctttgataagaagtgttg 288  Q
    ||||||| |||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||| ||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  289 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 388  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  389 tggagttcgcataataatgcagtttttga 417  Q
    ||||||| |||||||||||||||||||||    
T  908300 tggagtttgcataataatgcagtttttga 908328  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 44172944 - 44172879
Alignment:
Q  84 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgtca 149  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgtca 44172879  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 36314685 - 36314626
Alignment:
Q  80 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgt 139  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| |||||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgt 36314626  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 21686232 - 21686204
Alignment:
Q  148 cagacacacctttgattagaagtgtcgat 176  Q
    |||||||||||||||||||||||||||||    
T  21686232 cagacacacctttgattagaagtgtcgat 21686204  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 38134470 - 38134414
Alignment:
Q  74 atgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 130  Q
    |||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134470 atgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 8039206 - 8039275
Alignment:
Q  79 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgtc 148  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| ||||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgtc 8039275  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  190 ataattcgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 241  Q
    |||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  79 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 141  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 22402419 - 22402459
Alignment:
Q  114 aatgtaaccacatgtgttagtgttgtgttagtgtcagacac 154  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  22402419 aatgtaaccacatgtgtcggtgtcgtgttagtgtcagacac 22402459  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 43328464 - 43328542
Alignment:
Q  76 gttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgtcagacac 154  Q
    ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||| |||||    
T  43328464 gttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgtcggacac 43328542  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  93 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 141  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

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