View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_182 (Length: 252)
Name: NF8548A_low_182
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_182 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 40093770 - 40093978
Alignment:
| Q |
21 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40093770 |
tcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgtcgattgcacagactcatg |
40093869 |
T |
|
| Q |
121 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093870 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagttt |
40093969 |
T |
|
| Q |
221 |
aaacatgag |
229 |
Q |
| |
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||||||||| |
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| T |
40093970 |
aaacatgag |
40093978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 40063139 - 40063346
Alignment:
| Q |
21 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063139 |
tcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
40063238 |
T |
|
| Q |
121 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagttt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40063239 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaaaaagagttt |
40063338 |
T |
|
| Q |
221 |
aaacatga |
228 |
Q |
| |
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|||||||| |
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| T |
40063339 |
aaacatga |
40063346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 40081490 - 40081694
Alignment:
| Q |
21 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
120 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
40081490 |
tcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactcatg |
40081589 |
T |
|
| Q |
121 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgcaaattttcaatgaagaagagttt |
220 |
Q |
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|||||| |||||||||| |||| | | ||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
40081590 |
caactatagaggaccttatacttcatctaaatgtcgcaagaactgtggaaaaccgtcacagacattgtaagtgttgcaaattttcaataaaaaaaagttt |
40081689 |
T |
|
| Q |
221 |
aaaca |
225 |
Q |
| |
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||||| |
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| T |
40081690 |
aaaca |
40081694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 22012707 - 22012538
Alignment:
| Q |
21 |
tcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatg |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||| | || | ||| | | || || |||||||| |
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| T |
22012707 |
tcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggcgatactggccaacatacatctctccgaattctggctgtactgactcatg |
22012608 |
T |
|
| Q |
121 |
caactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaa |
190 |
Q |
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||| || |||||| | | | || | ||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
22012607 |
caattatagaggaacatattctgcatccaaatgcctcaagaattgtggaaaaccatcacagacattgtaa |
22012538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
29 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
69 |
Q |
| |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
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