View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_185 (Length: 251)

Name: NF8548A_low_185
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_185
NF8548A_low_185
[»] chr3 (25 HSPs)
chr3 (6-235)||(41985620-41985852)
chr3 (8-235)||(41980846-41981073)
chr3 (125-227)||(9494822-9494924)
chr3 (6-227)||(9448314-9448535)
chr3 (111-227)||(9343845-9343961)
chr3 (111-219)||(9329844-9329952)
chr3 (111-219)||(9336548-9336656)
chr3 (111-227)||(9407366-9407482)
chr3 (114-227)||(9655360-9655473)
chr3 (114-227)||(9425573-9425686)
chr3 (114-227)||(9646367-9646480)
chr3 (111-227)||(9617463-9617579)
chr3 (111-219)||(9695616-9695724)
chr3 (143-227)||(9397785-9397869)
chr3 (126-219)||(9340679-9340772)
chr3 (111-213)||(9416587-9416689)
chr3 (125-215)||(9352913-9353003)
chr3 (126-219)||(9347995-9348088)
chr3 (126-219)||(9369649-9369742)
chr3 (105-226)||(9756381-9756502)
chr3 (111-227)||(9432896-9433012)
chr3 (145-213)||(9441815-9441883)
chr3 (167-219)||(9614009-9614061)
chr3 (119-183)||(9626488-9626552)
chr3 (111-159)||(9686751-9686799)
[»] chr8 (2 HSPs)
chr8 (6-171)||(13170579-13170744)
chr8 (6-229)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (6-235)||(18991196-18991422)
chr1 (134-227)||(235213-235306)
chr1 (160-227)||(4439860-4439927)
chr1 (143-230)||(4428628-4428715)
chr1 (134-227)||(8814385-8814478)
chr1 (134-227)||(251417-251510)
chr1 (136-190)||(246904-246958)
chr1 (134-219)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (114-227)||(20694304-20694417)
[»] chr6 (7 HSPs)
chr6 (111-227)||(7041496-7041612)
chr6 (133-227)||(7046839-7046933)
chr6 (133-190)||(7025793-7025850)
chr6 (133-190)||(7029850-7029907)
chr6 (133-190)||(9159517-9159574)
chr6 (133-190)||(9170854-9170911)
chr6 (133-190)||(7012857-7012914)
[»] chr7 (2 HSPs)
chr7 (150-230)||(3695687-3695767)
chr7 (111-186)||(450111-450186)
[»] chr5 (1 HSPs)
chr5 (125-178)||(18571160-18571213)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 41985852 - 41985620
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 102  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  103 tttaaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  203 ttttccgcttctgcttcggatttgtctgatgtc 235  Q
    ||||| |||||||||||||||||||||| ||||    
T  41985652 ttttctgcttctgcttcggatttgtctgttgtc 41985620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 41981073 - 41980846
Alignment:
Q  8 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 107  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  108 agcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 207  Q
    | ||||||||||| || |||| |  ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  208 cgcttctgcttcggatttgtctgatgtc 235  Q
     |||||||||||  ||||||||| ||||    
T  41980873 tgcttctgcttcaaatttgtctgttgtc 41980846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 227
Target Start/End: Original strand, 9494822 - 9494924
Alignment:
Q  125 cttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatt 224  Q
    ||||||| |||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  225 tgt 227  Q
    |||    
T  9494922 tgt 9494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 9448535 - 9448314
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  106 aaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    || | |||||||||| |  ||| ||| |||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttt 9448336  T
Q  206 tccgcttctgcttcggatttgt 227  Q
    || |||||||||||||||||||    
T  9448335 tctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 9343961 - 9343845
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    |||||||||| |  ||||||| || ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  211 ttctgcttcggatttgt 227  Q
    |||||||||||||||||    
T  9343861 ttctgcttcggatttgt 9343845  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 9329952 - 9329844
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    |||||||||| || ||||||| ||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||| ||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  9329852 ttctgcttc 9329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 9336656 - 9336548
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    |||||||||| || ||||||| ||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||| ||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  9336556 ttctgcttc 9336548  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 9407482 - 9407366
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    |||||||||| |||||||| | |||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||| ||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  211 ttctgcttcggatttgt 227  Q
    ||| |||||||||||||    
T  9407382 ttcagcttcggatttgt 9407366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 9655360 - 9655473
Alignment:
Q  114 atgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttc 213  Q
    |||| |||||| || ||| |||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | |||||||||||||| || ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  214 tgcttcggatttgt 227  Q
     |||||||||||||    
T  9655460 agcttcggatttgt 9655473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 9425686 - 9425573
Alignment:
Q  114 atgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttc 213  Q
    ||||||| |||||||| | |||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| ||||| |||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  214 tgcttcggatttgt 227  Q
     |||||||||||||    
T  9425586 agcttcggatttgt 9425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 9646367 - 9646480
Alignment:
Q  114 atgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttc 213  Q
    |||| |||||| || ||| |||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | |||||||||||||| || ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  214 tgcttcggatttgt 227  Q
     |||||||||||||    
T  9646467 agcttcggatttgt 9646480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 9617463 - 9617579
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    |||| ||||||||  || ||| ||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||| ||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  211 ttctgcttcggatttgt 227  Q
    ||||||||| |||||||    
T  9617563 ttctgcttcagatttgt 9617579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 9695616 - 9695724
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    ||||||| ||||| ||||||| |||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| || ||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  211 ttctgcttc 219  Q
     ||||||||    
T  9695716 atctgcttc 9695724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 9397869 - 9397785
Alignment:
Q  143 aaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    ||||| || ||||||  ||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |||| ||||||||    
T  9397869 aaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttccgcttcagctttggatttgt 9397785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  126 ttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttc 219  Q
    |||||| |||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  ||||||||||||||| |||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 9416689 - 9416587
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    ||||||||||| | ||||| | |||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||| ||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  211 ttc 213  Q
    |||    
T  9416589 ttc 9416587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 9353003 - 9352913
Alignment:
Q  125 cttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctg 215  Q
    ||||||| || ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||| |||||||    
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctg 9352913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9348088 - 9347995
Alignment:
Q  126 ttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttc 219  Q
    |||||| |||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||| |||||||||||    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9369742 - 9369649
Alignment:
Q  126 ttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttc 219  Q
    |||||| |||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||| |||||||||||    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttc 9369649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  105 taaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 204  Q
    ||||| |||||||||  || ||||||| ||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  205 ttccgcttctgcttcggatttg 226  Q
     || || ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 9433012 - 9432896
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    ||||||| ||||||||||||| |||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||| ||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  211 ttctgcttcggatttgt 227  Q
    ||| || ||||||||||    
T  9432912 ttcagcctcggatttgt 9432896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 9441815 - 9441883
Alignment:
Q  145 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttc 213  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||| |||||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttc 9441883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 9614009 - 9614061
Alignment:
Q  167 ggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttc 219  Q
    |||||||  ||||| |||||||||| ||||||||| ||||| |||||||||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttc 9614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9626488 - 9626552
Alignment:
Q  119 ttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgtt 183  Q
    |||||| || ||| |||||||||||||||||| || |||  || |||||||||||| ||||||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgtt 9626552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggc 159  Q
    ||||||| ||||| ||||||| ||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  106 aaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttagggga 171  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 44688680 - 44688903
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  106 aaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    |  ||||||||||||||  ||  ||| |||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  206 tccgcttctgcttcggatttgtct 229  Q
    ||  || |||||||||||||||||    
T  44688880 tctactactgcttcggatttgtct 44688903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 18991422 - 18991196
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  106 aaagcttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    ||| ||  | ||||| || ||| ||| ||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  206 tccgcttctgcttcggatttgtctgatgtc 235  Q
    || ||||||||||| ||||| |||| ||||    
T  18991225 tctgcttctgcttctgatttatctgttgtc 18991196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 235306 - 235213
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     |||||||||||| |||||||||||||||||||    
T  235306 aaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgt 235213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 4439927 - 4439860
Alignment:
Q  160 gagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgt 4439860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 4428715 - 4428628
Alignment:
Q  143 aaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgtctg 230  Q
    |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| |||||| || |||||||| || |||||||    
T  4428715 aaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctgcttctgagttgtctg 4428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 8814385 - 8814478
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| ||||| |||||||||| ||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgt 8814478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 251417 - 251510
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||| | |||||| ||||||||||    
T  251417 aaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgt 251510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 246958 - 246904
Alignment:
Q  136 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttgggg 246904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttc 219  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| ||||| |||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 20694304 - 20694417
Alignment:
Q  114 atgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttc 213  Q
    |||||||||| |||||||  ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  214 tgcttcggatttgt 227  Q
    ||||||||||||||    
T  20694404 tgcttcggatttgt 20694417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 7041612 - 7041496
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgc 210  Q
    ||||| |||| | |||| ||| |||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| || |     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  211 ttctgcttcggatttgt 227  Q
    |||||||||||||||||    
T  7041512 ttctgcttcggatttgt 7041496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 7046933 - 7046839
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgt 227  Q
    |||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||| ||||||  ||| |||||||    
T  7046933 gaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgt 7046839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 7025850 - 7025793
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||    
T  7025850 gaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttgggg 7025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 7029907 - 7029850
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029907 gaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 9159517 - 9159574
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9159517 gaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9159574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 9170911 - 9170854
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||    
T  9170911 gaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttgggg 9170854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 7012914 - 7012857
Alignment:
Q  133 gaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||    
T  7012914 gaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttgggg 7012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 3695767 - 3695687
Alignment:
Q  150 tcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttccgcttctgcttcggatttgtctg 230  Q
    ||||||||  ||||||||||||||||||||||||||| || |    |||||| ||||| |||  |||||||||||||||||    
T  3695767 tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggatttgtctg 3695687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 450111 - 450186
Alignment:
Q  111 ttgatgtgttcagacttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttctt 186  Q
    |||||||||| || ||||||| ||||||||| || ||||||||||||  || |||||| |||| | ||||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttctt 450186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 18571213 - 18571160
Alignment:
Q  125 cttgatgggaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt 178  Q
    ||||||| |||||||||||| ||||| || ||| ||||||||||||||| ||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagtt 18571160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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