View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_186 (Length: 250)
Name: NF8548A_low_186
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_186 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 40154211 - 40153975
Alignment:
| Q |
14 |
ctggtcaatcaaagtcccttaagtctctatgtagatcactcacgggtgcactgtctgatgtgaagatgttgttgatcataccccttatagcatattcagg |
113 |
Q |
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| T |
40154211 |
ctggtcaatcaaagtcccttaagtctctatgtagatcactcacgggtgcactgtctgatgtgaagatgttgttgatcataccccttatagcatattcagg |
40154112 |
T |
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| Q |
114 |
tctacaacacgcatttgtatggtaatttcatatgaatcataagttatcttccttgtgatattccaaatattgctctttgagttcttgttttcttttctgt |
213 |
Q |
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| T |
40154111 |
tctacaacacgcttttgtatggtaatttcatatgaatcataagttatcttccttgtgatattccaaatattgctctttgagttcttgttttctttcctgt |
40154012 |
T |
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| Q |
214 |
ctattttgtaatgtcagttaataaaatactttttcac |
250 |
Q |
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| T |
40154011 |
ctattttgtaatgtcagttaataaaatactttttcac |
40153975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 40147563 - 40147333
Alignment:
| Q |
20 |
aatcaaagtcccttaagtctctatgtagatcactcacgggtgcactgtctgatgtgaagatgttgttgatcataccccttatagcatattcaggtctaca |
119 |
Q |
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| T |
40147563 |
aatcaaagtcccttaagtctctatgtaaatcactcacaagtgcactgtctgatgcgaagatgttgttgatcataccccttatggcatattcaggtctaca |
40147464 |
T |
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| Q |
120 |
acacgcatttgtatggtaatttcatatgaatcataagttatcttccttgtgatattccaaatattgctctttgagttcttgttttcttttctgtctattt |
219 |
Q |
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| T |
40147463 |
acaagcatttgtatggtaatttcatatgaatcataagttaacttcctagtgatattccaaatattgctctttgagttcttgttttcttttctgtctattt |
40147364 |
T |
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| Q |
220 |
tgtaatgtcagttaataaaatactttttcac |
250 |
Q |
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| T |
40147363 |
tgtaatgtcagttaataaaatactttttcac |
40147333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 40109843 - 40109716
Alignment:
| Q |
28 |
tcccttaagtctctatgtagatcactcacgggtgcactgtctgatgtgaagatgttgttgatcataccccttatagcatattcaggtctacaacacgcat |
127 |
Q |
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| T |
40109843 |
tccctgaagtctctatgtagatcactcaagagttcattctctgatgcaaatatgttgttgatcatacctcttattgcatattcaggtctacaagcagcat |
40109744 |
T |
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| Q |
128 |
ttgtatggtaatttcatatgaatcataa |
155 |
Q |
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| T |
40109743 |
ttgtatggtaatttcttatgaaccataa |
40109716 |
T |
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