View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_195 (Length: 249)
Name: NF8548A_low_195
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_195 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 5898630 - 5898389
Alignment:
| Q |
8 |
gagatgaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
107 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5898630 |
gagaagaagaaccagagctgcttagatcagaagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
5898531 |
T |
|
| Q |
108 |
atggtcatagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5898530 |
atggtcatagttccaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
5898431 |
T |
|
| Q |
208 |
ggaaaagctaaaatgatttttgtgattgtagataagtacctt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5898430 |
ggaaaagctaaaatgatttttgtgattgtagataagtacctt |
5898389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 5860445 - 5860210
Alignment:
| Q |
13 |
gaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattcttatggt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5860445 |
gaagaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatggt |
5860346 |
T |
|
| Q |
113 |
catagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaaggaaa |
212 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
5860345 |
catagctccaacgaatgtagctatccttgatttaggatgttaacaccattcattttttccttaacctttgaaccagtttggtcaatgatcatcaaggaaa |
5860246 |
T |
|
| Q |
213 |
agctaaaatgatttttgtgattgtagataagtacctt |
249 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
5860245 |
agctaaaatga-ttttgtgattgtagataactacctt |
5860210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University