View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_199 (Length: 249)
Name: NF8548A_low_199
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_199 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28403 - 28628
Alignment:
| Q |
1 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28403 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcac |
28488 |
T |
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| Q |
101 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattcttctcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28489 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
28588 |
T |
|
| Q |
201 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28589 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
28628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 275513 - 275738
Alignment:
| Q |
1 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
275513 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcac |
275598 |
T |
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| Q |
101 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattcttctcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
200 |
Q |
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| T |
275599 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
275698 |
T |
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| Q |
201 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
240 |
Q |
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| T |
275699 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
275738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26396117 - 26396343
Alignment:
| Q |
1 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26396117 |
gaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcac |
26396202 |
T |
|
| Q |
101 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttctcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396203 |
gctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
26396302 |
T |
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| Q |
200 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396303 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
26396343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26015593 - 26015528
Alignment:
| Q |
109 |
tagattttctctttcgacctctttcaatgccgctctttattcttctcggtgccccttttgtttttg |
174 |
Q |
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||||| ||||||| |||||||| || || || |||||||||||||| || ||||||||||| |||| |
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| T |
26015593 |
tagatgttctcttacgacctctctcgatcccactctttattcttcttggagccccttttgtatttg |
26015528 |
T |
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