View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_21 (Length: 436)
Name: NF8548A_low_21
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 404
Target Start/End: Complemental strand, 6495596 - 6495203
Alignment:
| Q |
23 |
caaaacgttatgcagcctgaaacaaattagatatgcaaggtcaaccaagtgaaaattaatatacatatagttatat--------------gcataatata |
108 |
Q |
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| T |
6495596 |
caaaacgttatgcagcctgaaacaaattagatatgcaaagtcaaccaagtgaaaattaatatacatatagttatatagctgtaggtatatgcataatata |
6495497 |
T |
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| Q |
109 |
aattagtttagtaaaggatgagggacttactttttctagggtcagatgaggcagagcagcaatcacaaagaccggtggaccattcaactagaggtttagg |
208 |
Q |
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| T |
6495496 |
aattagtttagtaaaggatgagggacttactttttctagggtcagatgaggcagagcagcaatcacaaagaccggtggaccattcaactagaggtttagg |
6495397 |
T |
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| Q |
209 |
cggaggaggaggagcgtaatccgatgaggcaccggagtacgccgatttagtgctgttgtagctcactggaatacctgtggctgctgctggtggttgattg |
308 |
Q |
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| T |
6495396 |
cggaggaggaggcgcgtaatccgatgaggcaccggagtacgccgatgtagtgctgttgtagctcactggaatacctgtggctgctgctggtggttgattg |
6495297 |
T |
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| Q |
309 |
tatgctggctttccttgttctggtggtggatacatttttggaacttgctaaattgacttgaagcagattgtatggatataagagtgttatgttgtg |
404 |
Q |
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| T |
6495296 |
tatgttggctttccttgttctggtggtggatacatttttggaacttactaaattgacttgaagcagattgtatgg--ataagagtgttatgttgtg |
6495203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 118 - 324
Target Start/End: Complemental strand, 44211373 - 44211173
Alignment:
| Q |
118 |
agtaaaggatgagggacttactttttctagggtcagatgaggcagagcagcaatcacaaagaccggtggaccattcaactagaggtttaggcggaggagg |
217 |
Q |
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| T |
44211373 |
agtaaaggatgggggacttactttttccagggtcaga---------gcaacaatcacaaagaccagtggaccattcaactagaggtttaggaggaggagg |
44211283 |
T |
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| Q |
218 |
aggag---cgtaatccgatgaggcaccggagtacgccgatttagtgctgttgtagctcactggaatacctgtggctgctgctggtggttgattgtatgct |
314 |
Q |
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| T |
44211282 |
aggaggcgcgtaatccgttgaggcaccggagtaccccgatgtagcgctgttgtagctaaccggaaaacctgtggcagctccttgtggttgattgtatgct |
44211183 |
T |
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| Q |
315 |
ggctttcctt |
324 |
Q |
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|||||||||| |
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| T |
44211182 |
ggctttcctt |
44211173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 44211455 - 44211415
Alignment:
| Q |
26 |
aacgttatgcagcctgaaacaaattagatatgcaaggtcaa |
66 |
Q |
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| T |
44211455 |
aacgttatgcaacctgaaacaaattagatatgcaaagtcaa |
44211415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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