View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_210 (Length: 247)
Name: NF8548A_low_210
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_210 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 5859909 - 5860131
Alignment:
| Q |
22 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
121 |
Q |
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| T |
5859909 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtacatcccctcatctaactttaaccttcaaagacaaatgccaagtgcga |
5860008 |
T |
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| Q |
122 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcattctagtacaaagtttagttgttacacagcatttcaaccagaaaat |
221 |
Q |
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| T |
5860009 |
attctaaattcataagttgattccttgcatg--tttagtctttccttcatttcattctagtacaaagtttagctgtttcacagcatttcaaccagaaaaa |
5860106 |
T |
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| Q |
222 |
atattgctccaagaatttttagact |
246 |
Q |
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||| ||||||||||||||||||||| |
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| T |
5860107 |
ataatgctccaagaatttttagact |
5860131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 5898103 - 5898310
Alignment:
| Q |
22 |
atattgtacattaatttcattgcaaatcttcaataaaattgtatgagattgtatatcccctaatctaactttaaccttcaaagacaaatgcaaattgaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
5898103 |
atattgtacattaatttcattgcaaatcttcaataaaattgtataagattgtatatcccctaatctaactttaatcttcaaagacaaatgccaattgcaa |
5898202 |
T |
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| Q |
122 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcattctagtacaaagtttagttgttacacagcatttcaaccagaaaat |
221 |
Q |
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| T |
5898203 |
attctgaattcataaattgattccttgcatgtcttaagtctttccttcatctcat-----------------gtgttacacagcatttcaaccagaaaa- |
5898284 |
T |
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| Q |
222 |
atattgctccaagaatttttagactt |
247 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5898285 |
atattgctccaagaatttttagactt |
5898310 |
T |
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