View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_211 (Length: 247)
Name: NF8548A_low_211
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_211 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 54793596 - 54793816
Alignment:
| Q |
8 |
gaaaagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgc |
107 |
Q |
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| T |
54793596 |
gaaaagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgc |
54793695 |
T |
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| Q |
108 |
tctgtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54793696 |
tctgtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctg |
54793795 |
T |
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| Q |
208 |
tgtttttgaagtagctatgct |
228 |
Q |
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||||||||||||||||||||| |
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| T |
54793796 |
tgtttttgaagtagctatgct |
54793816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 52286277 - 52286496
Alignment:
| Q |
8 |
gaaaagaatgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgc |
107 |
Q |
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|||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52286277 |
gaaaagaatgggagaccttgatcagaaagtttttgtgaatgtctgcaagaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgc |
52286376 |
T |
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| Q |
108 |
tctgtttggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctg |
207 |
Q |
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| T |
52286377 |
tctttttggcaggagaatgtgaagaattcagcttggcacccttttaaagtcgtcagagagaatgatagccatgtggtatgtaccataaagacatgctctg |
52286476 |
T |
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| Q |
208 |
tgtttttgaagtagctatgc |
227 |
Q |
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|||||||| ||||| ||||| |
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| T |
52286477 |
tgtttttgcagtagttatgc |
52286496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 54775932 - 54775823
Alignment:
| Q |
119 |
ggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgtttttgaag |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775932 |
ggagcatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacccatgaggtatgtaccataaagacatgctctgtgtttttgaag |
54775833 |
T |
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| Q |
219 |
tagctatgct |
228 |
Q |
| |
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|||||||||| |
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| T |
54775832 |
tagctatgct |
54775823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 801450 - 801656
Alignment:
| Q |
15 |
atgggagaccttgatgagaaggtttttgtgcaagtctgcaagaaaagatttctttctcaagaagaagctgggatgaaggccatggagctttgctctgttt |
114 |
Q |
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|||||||||||||| |||||||||||||| | | |||||||||||||||| |||| || ||||||||||| |||||| | |||||||||||| | | |
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| T |
801450 |
atgggagaccttgaccagaaggtttttgtgaatgcctgcaagaaaagattttcttct---gatgaagctgggataaaggccgttgagctttgctctttat |
801546 |
T |
|
| Q |
115 |
ggcaggagaatgtgaaaaattcagcatggcacccttttaaagtggtcagagtgaatgatacacatgaggtatgtaccataaagacatgctctgtgttttt |
214 |
Q |
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||||||| |||||||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||||||| ||||| |||||||||||||||| |
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| T |
801547 |
ggcaggaaaatgtgaagaactcagcttggcacccttttaaagtggtcagtcagaatgataaccccgtggtatgtaccctaaagccatgctctgtgttttt |
801646 |
T |
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| Q |
215 |
gaagtagcta |
224 |
Q |
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| ||| |||| |
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| T |
801647 |
ggagtggcta |
801656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 54775985 - 54775950
Alignment:
| Q |
8 |
gaaaagaatgggagaccttgatgagaaggtttttgt |
43 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54775985 |
gaaaagaatgggagaccttgatgagaaggtttttgt |
54775950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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