View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_218 (Length: 245)
Name: NF8548A_low_218
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_218 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 49166116 - 49165890
Alignment:
| Q |
19 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
118 |
Q |
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| T |
49166116 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
49166017 |
T |
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| Q |
119 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtattctttttgggacccaagtactt |
218 |
Q |
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| T |
49166016 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
49165917 |
T |
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| Q |
219 |
gctcgagaatgaatttcgtacacgctg |
245 |
Q |
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| T |
49165916 |
gctcgagaatgaatttcgtacacgctg |
49165890 |
T |
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Back To:
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 43752543 - 43752422
Alignment:
| Q |
20 |
catcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcacccaa |
119 |
Q |
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|||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||| |
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| T |
43752543 |
catcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacctgtactcaa |
43752444 |
T |
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| Q |
120 |
ctttgttgctggttcggatgga |
141 |
Q |
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||| |||| |||||||||||| |
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| T |
43752443 |
cttggttgacggttcggatgga |
43752422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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