View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_222 (Length: 244)

Name: NF8548A_low_222
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_222
NF8548A_low_222
[»] chr1 (30 HSPs)
chr1 (20-244)||(31745393-31745616)
chr1 (94-240)||(40377012-40377158)
chr1 (94-241)||(7549813-7549960)
chr1 (119-232)||(36393479-36393592)
chr1 (119-240)||(50974564-50974685)
chr1 (94-226)||(45584509-45584641)
chr1 (94-240)||(31652593-31652738)
chr1 (94-241)||(44719151-44719298)
chr1 (119-211)||(4039621-4039713)
chr1 (119-240)||(5851530-5851649)
chr1 (118-224)||(25302066-25302172)
chr1 (94-195)||(25095579-25095680)
chr1 (97-232)||(34596118-34596250)
chr1 (146-240)||(12148289-12148383)
chr1 (117-205)||(45753443-45753531)
chr1 (94-203)||(34445639-34445748)
chr1 (124-232)||(12636305-12636414)
chr1 (119-232)||(40203076-40203189)
chr1 (119-202)||(5115634-5115717)
chr1 (97-203)||(28672315-28672420)
chr1 (117-238)||(5787434-5787554)
chr1 (151-233)||(42850094-42850176)
chr1 (149-226)||(50222611-50222688)
chr1 (119-206)||(33744159-33744246)
chr1 (145-240)||(48947225-48947320)
chr1 (118-172)||(5597710-5597764)
chr1 (94-235)||(13954126-13954271)
chr1 (94-156)||(27396102-27396164)
chr1 (124-206)||(39241430-39241512)
chr1 (150-206)||(48253319-48253375)
[»] chr4 (32 HSPs)
chr4 (94-240)||(49446583-49446730)
chr4 (94-233)||(44646522-44646661)
chr4 (119-232)||(44647879-44647992)
chr4 (95-239)||(42197007-42197150)
chr4 (94-215)||(6316821-6316942)
chr4 (113-225)||(9802621-9802732)
chr4 (122-237)||(20390023-20390138)
chr4 (111-226)||(42844030-42844145)
chr4 (120-240)||(41468080-41468200)
chr4 (98-177)||(25196110-25196189)
chr4 (122-216)||(33982423-33982517)
chr4 (144-234)||(44088286-44088376)
chr4 (136-229)||(50115059-50115149)
chr4 (94-195)||(40480205-40480306)
chr4 (94-173)||(28165362-28165442)
chr4 (119-206)||(12103864-12103951)
chr4 (119-232)||(24395194-24395308)
chr4 (135-225)||(49144774-49144864)
chr4 (159-240)||(38494748-38494829)
chr4 (123-205)||(39727579-39727660)
chr4 (94-206)||(50086432-50086543)
chr4 (122-195)||(34235910-34235984)
chr4 (159-225)||(36721591-36721657)
chr4 (128-237)||(49769110-49769219)
chr4 (136-195)||(31871090-31871149)
chr4 (94-224)||(52373050-52373181)
chr4 (119-177)||(27346293-27346351)
chr4 (119-189)||(53919863-53919933)
chr4 (135-224)||(1696194-1696283)
chr4 (124-173)||(27706954-27707003)
chr4 (94-155)||(44088211-44088272)
chr4 (117-189)||(5387950-5388022)
[»] chr3 (24 HSPs)
chr3 (94-240)||(34758899-34759045)
chr3 (95-240)||(54911988-54912133)
chr3 (119-240)||(18399149-18399271)
chr3 (95-232)||(30687077-30687214)
chr3 (94-233)||(27968170-27968307)
chr3 (94-233)||(52340118-52340257)
chr3 (106-224)||(38388694-38388812)
chr3 (94-177)||(779728-779810)
chr3 (94-205)||(28434481-28434591)
chr3 (94-211)||(38704969-38705086)
chr3 (130-228)||(7754772-7754871)
chr3 (119-232)||(4033026-4033138)
chr3 (141-232)||(19898100-19898191)
chr3 (139-206)||(55110042-55110109)
chr3 (95-232)||(25548196-25548333)
chr3 (122-177)||(1680511-1680566)
chr3 (115-173)||(2831538-2831596)
chr3 (123-173)||(43749531-43749581)
chr3 (135-205)||(53433211-53433281)
chr3 (118-172)||(11404700-11404754)
chr3 (94-131)||(29497248-29497285)
chr3 (94-139)||(29611990-29612035)
chr3 (137-177)||(37775371-37775411)
chr3 (139-214)||(54955783-54955859)
[»] chr5 (23 HSPs)
chr5 (94-237)||(8247037-8247180)
chr5 (94-239)||(3263717-3263862)
chr5 (97-240)||(19692696-19692840)
chr5 (122-233)||(5356295-5356406)
chr5 (120-240)||(35395184-35395304)
chr5 (94-239)||(10051700-10051845)
chr5 (94-235)||(28793305-28793446)
chr5 (96-233)||(1354345-1354481)
chr5 (122-240)||(22473432-22473551)
chr5 (119-215)||(21582367-21582463)
chr5 (101-203)||(14042440-14042542)
chr5 (94-177)||(4725897-4725979)
chr5 (117-171)||(22871913-22871967)
chr5 (120-217)||(31889611-31889709)
chr5 (118-189)||(3758194-3758265)
chr5 (149-235)||(142350-142436)
chr5 (94-172)||(27650866-27650944)
chr5 (120-173)||(37976444-37976497)
chr5 (131-203)||(26663642-26663714)
chr5 (131-203)||(26935237-26935309)
chr5 (97-232)||(14474998-14475133)
chr5 (118-172)||(12933327-12933381)
chr5 (131-177)||(24241210-24241256)
[»] chr2 (22 HSPs)
chr2 (94-241)||(8789826-8789973)
chr2 (94-239)||(44941072-44941216)
chr2 (94-237)||(20682990-20683133)
chr2 (119-233)||(8773670-8773784)
chr2 (117-215)||(4238341-4238438)
chr2 (117-240)||(18053008-18053130)
chr2 (119-232)||(42945012-42945125)
chr2 (94-205)||(6761751-6761862)
chr2 (122-232)||(2393038-2393148)
chr2 (119-233)||(34546265-34546379)
chr2 (106-232)||(42966938-42967066)
chr2 (97-189)||(433551-433643)
chr2 (132-204)||(1070568-1070639)
chr2 (94-239)||(5961954-5962101)
chr2 (94-208)||(3882586-3882700)
chr2 (118-170)||(8898861-8898913)
chr2 (106-173)||(13442636-13442703)
chr2 (94-206)||(18227092-18227204)
chr2 (120-203)||(2825983-2826066)
chr2 (119-177)||(3199541-3199599)
chr2 (124-177)||(45212057-45212110)
chr2 (122-206)||(35228732-35228816)
[»] chr7 (26 HSPs)
chr7 (120-240)||(30412910-30413030)
chr7 (94-240)||(8170001-8170147)
chr7 (130-240)||(48137789-48137899)
chr7 (98-236)||(38452146-38452283)
chr7 (119-213)||(42493703-42493798)
chr7 (94-225)||(47507580-47507711)
chr7 (124-221)||(2964049-2964146)
chr7 (94-226)||(16878677-16878809)
chr7 (121-232)||(44391426-44391537)
chr7 (160-236)||(46684550-46684626)
chr7 (117-208)||(5248088-5248179)
chr7 (119-211)||(2741168-2741260)
chr7 (117-235)||(15034793-15034911)
chr7 (122-230)||(43670409-43670517)
chr7 (165-240)||(47305516-47305592)
chr7 (114-203)||(676400-676488)
chr7 (94-177)||(45375399-45375483)
chr7 (106-205)||(37352436-37352535)
chr7 (111-195)||(33887887-33887971)
chr7 (94-238)||(36015002-36015141)
chr7 (120-234)||(36285774-36285887)
chr7 (159-206)||(15995924-15995971)
chr7 (88-138)||(35599894-35599944)
chr7 (116-169)||(25120218-25120271)
chr7 (97-206)||(35754017-35754126)
chr7 (146-222)||(44495238-44495314)
[»] chr8 (18 HSPs)
chr8 (94-240)||(31206280-31206426)
chr8 (124-232)||(38956884-38956992)
chr8 (117-241)||(5217747-5217869)
chr8 (119-224)||(45368729-45368834)
chr8 (120-233)||(5020051-5020162)
chr8 (121-232)||(20169716-20169827)
chr8 (94-235)||(9632898-9633040)
chr8 (91-173)||(33636685-33636767)
chr8 (94-186)||(39932721-39932813)
chr8 (119-177)||(7044384-7044442)
chr8 (119-157)||(36819755-36819793)
chr8 (97-223)||(39691121-39691247)
chr8 (94-186)||(24103095-24103187)
chr8 (94-232)||(10335020-10335159)
chr8 (94-169)||(37564393-37564468)
chr8 (95-157)||(2124141-2124203)
chr8 (136-217)||(22601011-22601093)
chr8 (94-154)||(5968377-5968437)
[»] chr6 (10 HSPs)
chr6 (119-240)||(12383008-12383129)
chr6 (119-232)||(16442075-16442188)
chr6 (122-217)||(8176324-8176419)
chr6 (120-203)||(12307821-12307904)
chr6 (95-166)||(22696000-22696071)
chr6 (94-223)||(31702747-31702874)
chr6 (97-205)||(7465451-7465558)
chr6 (163-238)||(22695473-22695549)
chr6 (123-221)||(35241410-35241509)
chr6 (119-172)||(6048328-6048381)
[»] scaffold0246 (1 HSPs)
scaffold0246 (94-195)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 31745616 - 31745393
Alignment:
Q  20 atcaataaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattgtcttgttaaccagtgcctccgagac 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||| |    
T  31745616 atcaataaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattgtcttgttaactagtgcctccgaggc 31745518  T
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  31745517 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttactat 31745418  T
Q  220 ttaaaggccttaactagtgcctagt 244  Q
    |||||||||||||||||||||||||    
T  31745417 ttaaaggccttaactagtgcctagt 31745393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || ||||| |||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||| | |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| ||||||||||| |||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  219 tttaaaggccttaa 232  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||  ||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| |||| |||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  194 cacatattttcatgataagttactatttaaagg 226  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  94 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttt 192  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| || ||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  193 acacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| || |||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataa 211  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||| ||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||| ||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttact 217  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||| ||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  218 atttaaa 224  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| ||||||||||| |||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  194 ca 195  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||| ||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  197 atattttcatgataagttactatttaaaggccttaa 232  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  146 attattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttca 205  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||| ||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | |||||||| |||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  194 cacatatttt 203  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat-gataagttactattta 222  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||| ||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  223 aaggccttaa 232  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | |||||||| |||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  219 tttaaaggccttaa 232  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattt 202  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | |||||||  ||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||| ||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  197 atatttt 203  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttac 216  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | |||||||  |||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  217 tatttaaaggccttaactagtg 238  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  151 tttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||| ||||| ||||||||||||| ||||||||||  ||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  149 attttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaagg 226  Q
    ||||||||| ||| ||||||||||  ||| || |||||||| |||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||| ||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  145 aattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| || ||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  94 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 188  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  189 gtttacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    | ||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 156  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| ||||||||||| |||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  150 ttttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    |||||||| |||||||| |||||||||| || || ||||| ||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgttt 192  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||| ||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  193 acacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  |||||||||| |||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  194 cacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  |||||||||  ||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  219 tttaaaggccttaa 232  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttac 194  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||| ||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  195 acatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || |||||||| |||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  194 cacatattttcatgataagtta 215  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  113 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataag 212  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||| ||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  213 ttactatttaaag 225  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||| | |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  222 aaaggccttaactagt 237  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  111 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgata 210  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  211 agttactatttaaagg 226  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   ||||||||| |||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 25196110 - 25196189
Alignment:
Q  98 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatt 25196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttac 216  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||| ||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  144 aaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaact 234  Q
    |||||||||||| | ||| |||||||||| |||| | | ||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  136 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggcct 229  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | |||||||| |||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| ||||| |||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  194 ca 195  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 173  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||| ||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgtttacacatattttcatgataagttac 216  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||| ||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  217 tatttaaaggccttaa 232  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaag 225  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||| ||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||| ||||| |||||||| ||||||||||| ||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttca 205  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||| ||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||  ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  194 cacatattttcat 206  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgtttaca 195  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || |||||||| |||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaag 225  Q
    ||||||||||||||| |||||| |||||||| ||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  128 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggc 227  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||| ||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  228 cttaactagt 237  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  136 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttaca 195  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  |||||||||| |||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgttt 192  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||   ||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  193 acacatattttcatgataagttactatttaaa 224  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 27346293 - 27346351
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatt 27346351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 53919863 - 53919933
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 189  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  ||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattg 53919933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaa 224  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||| ||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 155  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 5388022 - 5387950
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 189  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || ||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattg 5387950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  ||||||||| |||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttac 194  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||| ||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  195 acatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  119 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttact 217  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  |||||||||| |||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  218 atttaaaggccttaactagtgcc 240  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttac 194  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||| ||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  195 acatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gttt 192  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| | ||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  193 acacatattttcatgataagttactatttaaaggccttaac 233  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgttt 192  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||| ||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  193 acacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttca 205  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||| ||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  206 tgataagttactatttaaa 224  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 779810 - 779728
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatt 779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| ||||||||||| |||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  194 cacatattttca 205  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  |||||||||| |||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  194 cacatattttcatgataa 211  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  130 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggcc 228  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| || ||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  219 tttaaaggccttaa 232  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  141 aataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||||||  ||| ||||||||||| ||| || |||||||| |||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  139 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||| ||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||| || ||||| ||||||||| |||    |||||||| |||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  194 cacatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 2831538 - 2831596
Alignment:
Q  115 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||||||||||| ||||| |||  || |||||||||| |||||||||||||||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttc 2831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 43749581 - 43749531
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||| |||||||||||||||||||||| ||| | |||||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttc 43749531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttca 205  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||| ||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaaga 131  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 139  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  137 aaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  139 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagtt 214  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||   ||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  |||||||||| |||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagt 237  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  |||||||||| |||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgtttaca 195  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || |||||||| |||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  196 catattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  222 aaaggccttaac 233  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  |||||||||| |||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  |||||||||  |||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  194 cacatattttcatgataagttactatttaaaggccttaacta 235  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  96 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttaca 195  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||| ||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  196 catattttcatgataagttactatttaaaggccttaac 233  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatt 220  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||| ||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  221 taaaggccttaactagtgcc 240  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagtta 215  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || || | ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  101 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatat 200  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||| ||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  201 ttt 203  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 171  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttact 217  Q
    ||||||||| ||||||||||||| |||||| ||||| || ||||| ||||||||| |||    |||||||| |||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 3758194 - 3758265
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 189  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattg 3758265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  149 attttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||| ||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatatttt 203  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| |||| |||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatatttt 203  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| |||| |||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| ||| |||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  197 atattttcatgataagttactatttaaaggccttaa 232  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   ||||||||| |||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  |||||||||| |||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  |||||||||| |||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagt 237  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||| ||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  219 tttaaaggccttaac 233  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagtta 215  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttac 216  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||| ||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  217 tatttaaaggccttaactagtgcc 240  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||| ||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  219 tttaaaggccttaa 232  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | |||||||| |||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  194 cacatattttca 205  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  ||||| || ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  222 aaaggccttaa 232  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||| ||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  219 tttaaaggccttaac 233  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgtttacacatattttc 204  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||| ||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  205 atgataag-ttactatttaaaggccttaa 232  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  97 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 189  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  132 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttc 204  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||| ||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgtt 191  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | |||||||| |    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  192 tacacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || |||||||| |||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  194 cacatattttcatga 208  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 170  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 173  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || |||||||| |||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  194 cacatattttcat 206  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatatttt 203  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||| ||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    |||||||  ||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||| |||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  130 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggcct 229  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  230 taactagtgcc 240  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  98 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacaca 197  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  198 tattttcatgataagttactatttaaaggccttaactag 236  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  119 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagt 213  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| |||| |||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  194 cacatattttcatgataagttactatttaaag 225  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| |||||||| |||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  194 cacatattttcatgataagttactatttaaagg 226  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  121 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||| ||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  220 ttaaaggccttaa 232  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  160 aagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaactag 236  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatga 208  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataa 211  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  |||||||||| |||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gtttacacatattttcatgataagtta 215  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| | |||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  216 ctatttaaaggccttaacta 235  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| || ||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  222 aaaggcctt 230  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  165 aaatatttcga-ttctcgatgcattgtttacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||| || ||||| ||| | |||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  114 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatatttt 203  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  |||||||| |||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 177  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttca 205  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | |||||||  ||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  111 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttaca 195  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || |||||||| |||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  |||| |||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtg 238  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| ||||| |||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  219 tttaaaggccttaact 234  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgtttacacatattttcat 206  Q
    ||||| ||||||||||||| || |||||||| ||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 35599944 - 35599894
Alignment:
Q  88 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaa 138  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaa 35599894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  116 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 169  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || |||||||  ||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  197 atattttcat 206  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  146 attattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattta 222  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||| ||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  |||||||||| |||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactatttaa 223  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  224 aggccttaa 232  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttac 216  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||| ||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  217 tatttaaaggccttaactagtgcct 241  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| || ||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  219 tttaaa 224  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||| ||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  220 ttaaaggccttaac 233  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  121 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgtttacacatattttcatgataagttactat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||| ||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  220 ttaaaggccttaa 232  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgtt 191  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   ||||||||| |    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  192 tacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  91 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 186  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 7044442 - 7044384
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| |||||||||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatt 7044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataa 157  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||  |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  197 atattttcatgataagttactatttaa 223  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 24103187 - 24103095
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 186  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  |||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgca 24103095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgttt 192  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || |||||||  ||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  193 acacatattttcatgataagttactatttaaaggccttaa 232  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 169  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 157  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 22601011 - 22601093
Alignment:
Q  136 aaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttact 217  Q
    ||||||| |||||||||||| || ||||||||||| ||| |||  ||||||||| |||||| | |||||||  ||||||||||    
T  22601011 aaaagaagaaattattttattaaaaaagtcaaatacttcaatttacgatgcattctttacataaattttcaaaataagttact 22601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 154  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||| ||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttacta 218  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   |||| |||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  219 tttaaaggccttaa 232  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttact 217  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| ||||||||||  |||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacacatatttt 203  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || ||||  |||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 166  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    |||||||| |||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  194 cacatattttcatgataagttactatttaa 223  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgtttacac 196  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  |||||||||| |||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  197 atattttca 205  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  163 tcaaatatttcgattctcgatgcattgtttacacata-ttttcatgataagttactatttaaaggccttaactagtg 238  Q
    ||||||||||| ||| ||||||||||| ||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgtttacacatattttcatgataagttactattt 221  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||| ||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 6048381 - 6048328
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattt 6048328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgttta 193  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| ||||| |||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  194 ca 195  Q
    ||    
T  18145 ca 18144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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