View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_224 (Length: 243)
Name: NF8548A_low_224
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_224 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 11227380 - 11227545
Alignment:
| Q |
20 |
atcataataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
119 |
Q |
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| T |
11227380 |
atcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
11227479 |
T |
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| Q |
120 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgtcctgttt |
185 |
Q |
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| T |
11227480 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctgttt |
11227545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 10128093 - 10128203
Alignment:
| Q |
67 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtactattt |
164 |
Q |
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| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtactattt |
10128192 |
T |
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| Q |
165 |
ttcttatatat |
175 |
Q |
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| T |
10128193 |
ttcttatatat |
10128203 |
T |
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