View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_229 (Length: 242)

Name: NF8548A_low_229
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_229
NF8548A_low_229
[»] chr5 (5 HSPs)
chr5 (35-228)||(29019905-29020096)
chr5 (151-209)||(6394722-6394780)
chr5 (38-81)||(33578162-33578205)
chr5 (40-81)||(6394893-6394934)
chr5 (172-209)||(22215397-22215434)
[»] chr4 (3 HSPs)
chr4 (128-197)||(21211527-21211595)
chr4 (155-209)||(20798095-20798149)
chr4 (150-195)||(20798129-20798174)
[»] chr2 (2 HSPs)
chr2 (150-209)||(18067273-18067332)
chr2 (129-189)||(797546-797605)
[»] chr8 (1 HSPs)
chr8 (128-209)||(104774-104855)
[»] chr3 (1 HSPs)
chr3 (129-206)||(44864606-44864682)
[»] chr1 (2 HSPs)
chr1 (150-198)||(45463603-45463651)
chr1 (155-209)||(45463631-45463685)
[»] chr6 (1 HSPs)
chr6 (130-199)||(16189978-16190046)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 29019905 - 29020096
Alignment:
Q  35 aagagtgtacaaagtaaacaaagattccaacaagatacataaatactnnnnnnnntatgaaaagtagataaaattagaggaacaaacatgattattataa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||| ||| |||||||||||||||    
T  29019905 aagagtgtacaaagtaaacaaagattccaacaagatacataaatactaaaaaa--tatgaaaagtaaataaaattagagggacagacatgattattataa 29020002  T
Q  135 ctaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaacttctaaatgtaatcaaaa 228  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||    
T  29020003 ctaactttgtcgttgttcatcaaaatcaagttctagaagtaatcaaaatgaaattccatcaaaattaagttctaatttctaaatgtaataaaaa 29020096  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 6394780 - 6394722
Alignment:
Q  151 ccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    |||||||||| |||||| | | ||||||||||| ||||||||||||||| |||||||||    
T  6394780 ccatcaaaatcaagttcaaaatgtaatcaaaataacattccatcaaaatcaagttctaa 6394722  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 33578162 - 33578205
Alignment:
Q  38 agtgtacaaagtaaacaaagattccaacaagatacataaatact 81  Q
    |||| |||||||||||| | ||||||||||||||||||||||||    
T  33578162 agtggacaaagtaaacataaattccaacaagatacataaatact 33578205  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 6394934 - 6394893
Alignment:
Q  40 tgtacaaagtaaacaaagattccaacaagatacataaatact 81  Q
    ||||||||||||||| | |||||||||| |||||||||||||    
T  6394934 tgtacaaagtaaacataaattccaacaacatacataaatact 6394893  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 22215397 - 22215434
Alignment:
Q  172 agtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  22215397 agtagtcaaaatgacattccatcaaaatcaagttctaa 22215434  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 21211527 - 21211595
Alignment:
Q  128 attataactaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaa 197  Q
    ||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||||||||    
T  21211527 attataattaactttgtcattttccatcaaaatgaagttctaaaagtaatcaaaa-gacatcccatcaaa 21211595  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 20798095 - 20798149
Alignment:
Q  155 caaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    |||||| |||||||| | ||||| ||||| ||||||||||||||| |||||||||    
T  20798095 caaaatcaagttctaaatgtaataaaaataacattccatcaaaatcaagttctaa 20798149  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 20798129 - 20798174
Alignment:
Q  150 tccatcaaaataaagttctagaagtaatcaaaatgacattccatca 195  Q
    ||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  20798129 tccatcaaaatcaagttctaaaagtactcaaaatgacatcccatca 20798174  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 18067332 - 18067273
Alignment:
Q  150 tccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    ||||||||||| |||||||| | |||||||||||||||| |||||||||| |||||||||    
T  18067332 tccatcaaaatcaagttctaaatgtaatcaaaatgacatcccatcaaaatcaagttctaa 18067273  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 797546 - 797605
Alignment:
Q  129 ttataactaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacatt 189  Q
    |||||| |||||||||||||  |||||||||| |||||||| | ||||||||| |||||||    
T  797546 ttataattaactttgtcatttcccatcaaaat-aagttctaaatgtaatcaaactgacatt 797605  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 104855 - 104774
Alignment:
Q  128 attataactaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    |||||||  ||||||||||||  | |||| ||| |||||||| | |||||||||||||||||||| |||||| |||||||||    
T  104855 attataatcaactttgtcatttcctatcagaatcaagttctaaatgtaatcaaaatgacattccagcaaaatcaagttctaa 104774  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 44864606 - 44864682
Alignment:
Q  129 ttataactaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttc 206  Q
    |||||| ||||||||||| |  ||| |||||||| |||||| | |||||||||||||||| |||||||||| ||||||    
T  44864606 ttataattaactttgtcaattcccaccaaaataa-gttctaaatgtaatcaaaatgacatcccatcaaaatcaagttc 44864682  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 45463651 - 45463603
Alignment:
Q  150 tccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaa 198  Q
    ||||||||||| |||||||| ||||| |||||||||||| |||||||||    
T  45463651 tccatcaaaatcaagttctaaaagtactcaaaatgacatcccatcaaaa 45463603  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 45463685 - 45463631
Alignment:
Q  155 caaaataaagttctagaagtaatcaaaatgacattccatcaaaataaagttctaa 209  Q
    |||||| |||||||| | ||||| ||||| ||||||||||||||| |||||||||    
T  45463685 caaaatcaagttctaaatgtaatgaaaataacattccatcaaaatcaagttctaa 45463631  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 16189978 - 16190046
Alignment:
Q  130 tataactaactttgtcattgtccatcaaaataaagttctagaagtaatcaaaatgacattccatcaaaat 199  Q
    |||||| |||||||||||| |||||||||||  ||||||| | ||||||| ||||||||  |||||||||    
T  16189978 tataaccaactttgtcattttccatcaaaat-tagttctaaatgtaatcataatgacatctcatcaaaat 16190046  T

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