View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_230 (Length: 242)
Name: NF8548A_low_230
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_230 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 40471216 - 40471315
Alignment:
| Q |
19 |
taaatgataccaatcttactgaccaagtaacaatttaactgagtttaattaattaattaattctaaaatattaaggggggcgggccagtttataaactta |
118 |
Q |
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| T |
40471216 |
taaatgataccaatcttactgaccaagtaacaatttaactgagt----ttaattaattaattctaaaatattaaggg----gggccagtttataaactta |
40471307 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 40471363 - 40471421
Alignment:
| Q |
178 |
ccccacaccactctcatctcctctccaatccaagctagccatagaaactacacagtcctaagtt |
241 |
Q |
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| T |
40471363 |
ccccacaccactctcatctcctctcca-----agctagccatagaaactacacagtcctaagtt |
40471421 |
T |
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