View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_231 (Length: 242)
Name: NF8548A_low_231
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_231 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 9523360 - 9523567
Alignment:
| Q |
18 |
aggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagcaatccgtattaagtgtgccgtgtgccccaattttgaccta |
117 |
Q |
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| T |
9523360 |
aggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaaaatattaccggagtaatccgtattaagtgtgccgtgtgccccgattttgactta |
9523459 |
T |
|
| Q |
118 |
tgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagtaaccattactttcaaatgtcttcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9523460 |
tgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagtaaccattactttcaaatgttttcct |
9523559 |
T |
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| Q |
218 |
ttgatgtc |
225 |
Q |
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|||||||| |
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| T |
9523560 |
ttgatgtc |
9523567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 9495543 - 9495757
Alignment:
| Q |
18 |
aggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagcaatccgtattaagtgtgccgtgtgccccaattttgaccta |
117 |
Q |
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| T |
9495543 |
aggtgaagcgaaaagggctttgtatcattgcaattactgtaataaagatattacaggaaaaatccgtatcaagtgtgccaagtgcccagattttgactta |
9495642 |
T |
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| Q |
118 |
tgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcag-------taaccattactttcaaatg |
210 |
Q |
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| T |
9495643 |
tgtattgagtgcttttctgttggagctgaggtgacaccccacaaaagcaatcataattacagggtcatggtcagtaaccactaaccattactttcaaatg |
9495742 |
T |
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| Q |
211 |
tcttcctttgatgtc |
225 |
Q |
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| T |
9495743 |
ttttcctttgatgtc |
9495757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 23045894 - 23045714
Alignment:
| Q |
38 |
tgtatcattgcaattactgtaagaaagatattactggagcaatccgtattaagtgtgccgtgtgccccaattttgacctatgtgttgagtgcttttctgt |
137 |
Q |
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| T |
23045894 |
tgtatcattgcaattactgtaatttcgatattacaggaaaaatccggattaagtgtgtcgtgtgctcagatttcgacttatgtgttgagtgcttttcggt |
23045795 |
T |
|
| Q |
138 |
tggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagtaaccattactttcaaatgtcttcctt |
218 |
Q |
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| T |
23045794 |
tggagctgagctgacaccccacaaaagcaatcatgcttacagggtcatggtcagtaaccattactttcaaatattttcctt |
23045714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 22513683 - 22513524
Alignment:
| Q |
19 |
ggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagcaatccgtattaagtgtgccgtgtgccccaattttgacctat |
118 |
Q |
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| T |
22513683 |
ggtgaagcgaaaagggctctgtatcattgccattattgtaataacgatcttacaggacaaatccggattaagtgtgccgtgtgcccagattttgacttat |
22513584 |
T |
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| Q |
119 |
gtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattaca |
178 |
Q |
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| T |
22513583 |
gtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgcttaca |
22513524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 22513348 - 22513515
Alignment:
| Q |
19 |
ggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagcaatccgtattaagtgtgccgtgtgccccaattttgacctat |
118 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||| |||||| || | || |||||| |||||||||| ||||||||| |||||||| ||| |
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| T |
22513348 |
ggtgaagcaaaaagggctctgtatcattgcaattattgtaataaagatcttgcaagacaaatccggattaagtgtgtcgtgtgcccagattttgacttat |
22513447 |
T |
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| Q |
119 |
gtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatg |
186 |
Q |
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| T |
22513448 |
gtgttgagtgcttttctgttggaactgaggtgacaccccacaaaagcaatcatgcttatagggtcatg |
22513515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 36861181 - 36861225
Alignment:
| Q |
127 |
tgcttttctgttggagctgagctgacaccccacaaaagcaatcat |
171 |
Q |
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| T |
36861181 |
tgcttttctgttggtgctgaggtgacacctcataaaagcaatcat |
36861225 |
T |
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