View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_234 (Length: 241)
Name: NF8548A_low_234
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_234 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 43238834 - 43239057
Alignment:
| Q |
20 |
atatgtgtaccaaa-tcttgcgtttttggaaattggaatgagttaacatattcaccatggaggttgaaggtagagcaagcaatgataactctctcactct |
118 |
Q |
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| T |
43238834 |
atatgtgtaccaaactcttgcgtttttggaaattggaatgagttaacatattcaccatggaggttgaaggtagagcaagcaatgataactctctcactct |
43238933 |
T |
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| Q |
119 |
caacctagaacatggtcaagaagacaagaatatctcaaatgattcttatgatctttccactgctcatactattgacaaaggtatattactc-tattctca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43238934 |
caacctagaacatggtcaagaagacaagaatatctcaaatgattcttatgacctttccactgctcatactattgacaaaggtatattactcttattctca |
43239033 |
T |
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| Q |
218 |
gttaaattatgttttaacttttat |
241 |
Q |
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| T |
43239034 |
gctaaattatgttttaacttttat |
43239057 |
T |
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