View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_237 (Length: 240)

Name: NF8548A_low_237
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_237
NF8548A_low_237
[»] chr4 (10 HSPs)
chr4 (1-230)||(4025394-4025623)
chr4 (1-187)||(4002467-4002653)
chr4 (1-188)||(3954193-3954380)
chr4 (3-190)||(4010166-4010353)
chr4 (1-119)||(3987163-3987281)
chr4 (1-96)||(4218811-4218906)
chr4 (3-102)||(3817754-3817853)
chr4 (3-96)||(3932841-3932934)
chr4 (1-93)||(3801754-3801846)
chr4 (3-39)||(3919674-3919710)
[»] chr5 (1 HSPs)
chr5 (1-186)||(13398118-13398303)
[»] scaffold1360 (1 HSPs)
scaffold1360 (3-96)||(1836-1929)
[»] chr8 (1 HSPs)
chr8 (1-57)||(7036230-7036286)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4025394 - 4025623
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025394 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 4025493  T
Q  101 aatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaagataaaggcctacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4025494 aatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaagataaaggcctacg 4025593  T
Q  201 aagcactaacatagacacaaacattgaaca 230  Q
    ||||||||||||||||||||||||||||||    
T  4025594 aagcactaacatagacacaaacattgaaca 4025623  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 4002467 - 4002653
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 100  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||| ||    
T  4002467 taccccaaattccaatgacacggaccttttctaactgttgacgtaacaatgattctaaatgtgcaactggtttgccaattccaataagtccttttgtatt 4002566  T
Q  101 aatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaag 187  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||    
T  4002567 aatagggtgcttactcaacctcttcaacacaagattgatgatttcttcaagtagctcagcatcattcctatacaacaaaagagaaag 4002653  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 3954380 - 3954193
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 100  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||||  | | ||||||| |||||||||||  ||||| ||||||    
T  3954380 taccccaaattccaatgacacaaaccttttctgacttttgacgtaacaatgattctaaatgtccaactggtttggcaattccaatatatccttctgtgtt 3954281  T
Q  101 aatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaaga 188  Q
    |||||| | ||| |||||||| |||| ||||||||||||||||||||||||||  ||  | ||||||||||||||||||||| |||||    
T  3954280 aataggatacttactcaacctcttcaacacaagattgatgatttcttcaagtatctcaacatcattcctatacaacaaaagagaaaga 3954193  T

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Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 4010166 - 4010353
Alignment:
Q  3 ccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgttaa 102  Q
    |||||||||||||| ||||  ||||||||||||||||   ||||||| || |  ||||| || |||| |||| ||||||||||||||||||||| |||||    
T  4010166 ccccaaattccaatgacactgaccttttctgactctttttgtaacaatgaattcaaatgtgcaattgatttgtcaattccaataagtccttttgagttaa 4010265  T
Q  103 tagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaagata 190  Q
      |||||||| |||||||| |||| ||  ||||||||||||||||| ||||| || || ||||| ||||||||||||||| |||||||    
T  4010266 ctgggtgcttactcaacctcttcaacaatagattgatgatttcttcgagtagctcagcatcatttctatacaacaaaagaaaaagata 4010353  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3987163 - 3987281
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 100  Q
    |||||||||||||||| ||||| ||||||| ||||||||    |||||| || | |||||| || |||| |||| ||||||||||||||||||||| |||    
T  3987163 taccccaaattccaatcacacggaccttttgtgactctttctttaacaatgaatttaaatgtgcaattgatttgtcaattccaataagtccttttgagtt 3987262  T
Q  101 aatagggtgcttgctcaac 119  Q
    ||  |||||||| ||||||    
T  3987263 aactgggtgcttactcaac 3987281  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4218811 - 4218906
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttg 96  Q
    |||||||||||||||||||||| |||||| | |||||||    |||||| || |  ||||| || ||||||||| | |||||||||||||||||||    
T  4218811 taccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatgtgcaattggtttgtccattccaataagtccttttg 4218906  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 3817754 - 3817853
Alignment:
Q  3 ccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgttaa 102  Q
    |||||||||||||||||||| |||| |||||||||||    |||||| || |  ||||  || ||||||||| ||||||||| |||| |||||| |||||    
T  3817754 ccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatccgcaattggtttgtcaattccaacaagttcttttgagttaa 3817853  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 3932934 - 3932841
Alignment:
Q  3 ccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttg 96  Q
    |||||||||||||||||||| |||| |||||||||||    |||||| || |  ||||  || ||||||||| ||||||||| ||||| |||||    
T  3932934 ccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtttgtcaattccaacaagtctttttg 3932841  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3801754 - 3801846
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtcctt 93  Q
    |||||||||||||||||||||| |||||| | |||||||    |||||| || |  ||||| || |||||| || | ||||||||||||||||    
T  3801754 taccccaaattccaataacacggacctttcccgactctttgtttaacaatgaattcaaatgtgcaattggtctgtccattccaataagtcctt 3801846  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3919710 - 3919674
Alignment:
Q  3 ccccaaattccaataacacgaaccttttctgactctt 39  Q
    |||||||||||||||||||| |||| |||||||||||    
T  3919710 ccccaaattccaataacacggacctgttctgactctt 3919674  T

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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13398118 - 13398303
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttgtgtt 100  Q
    |||||||||| ||||| || ||||||||||||||||||||| ||||||| | ||||||||| || |||| |||  |||||||||||||||||||||| ||    
T  13398118 taccccaaataccaattacgcgaaccttttctgactcttgatgtaacaatggttctaaatgtgcaattgctttctcaattccaataagtccttttgtttt 13398217  T
Q  101 aatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagttcggcgtcattcctatacaacaaaagataaa 186  Q
    || |||||||||  ||||||| |||| |||||| |||||||||||||||||||| || || |||||||||| ||||||||||||||    
T  13398218 aacagggtgcttattcaacctcttcaacacaagcttgatgatttcttcaagtagctcagcatcattcctatgcaacaaaagataaa 13398303  T

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Target: scaffold1360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 1929 - 1836
Alignment:
Q  3 ccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattctaaatgagccattggtttgccaattccaataagtccttttg 96  Q
    |||||||||||||||||||| |||| |||||||||||    |||||| || |  ||||  || ||||||||| ||||||||| ||||| |||||    
T  1929 ccccaaattccaataacacggacctgttctgactctttctttaacaatgaattcaaatctgcaattggtttgtcaattccaacaagtctttttg 1836  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7036286 - 7036230
Alignment:
Q  1 taccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattcta 57  Q
    ||||||||||||||| ||||||||| | ||||||||||  | ||||||| |||||||    
T  7036286 taccccaaattccaagaacacgaacatcttctgactctaaatgtaacaatgattcta 7036230  T

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