View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_238 (Length: 240)

Name: NF8548A_low_238
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_238
NF8548A_low_238
[»] chr2 (9 HSPs)
chr2 (26-220)||(2803210-2803404)
chr2 (20-104)||(33561489-33561573)
chr2 (20-104)||(29873575-29873659)
chr2 (32-104)||(30312825-30312897)
chr2 (27-129)||(13766795-13766899)
chr2 (21-98)||(28254276-28254353)
chr2 (32-73)||(36005930-36005971)
chr2 (22-78)||(962660-962716)
chr2 (29-73)||(31468797-31468841)
[»] chr6 (6 HSPs)
chr6 (22-104)||(8481962-8482044)
chr6 (37-104)||(5034876-5034943)
chr6 (20-73)||(10074401-10074454)
chr6 (63-104)||(27226675-27226716)
chr6 (32-104)||(6071168-6071240)
chr6 (21-73)||(10074030-10074082)
[»] chr5 (4 HSPs)
chr5 (27-134)||(10351216-10351325)
chr5 (20-73)||(35150073-35150126)
chr5 (20-101)||(36522275-36522356)
chr5 (32-104)||(36521946-36522018)
[»] chr4 (5 HSPs)
chr4 (51-129)||(42480533-42480611)
chr4 (20-96)||(23630348-23630424)
chr4 (22-73)||(22028407-22028458)
chr4 (32-104)||(34544142-34544215)
chr4 (20-104)||(15841404-15841488)
[»] chr8 (2 HSPs)
chr8 (20-104)||(4154319-4154402)
chr8 (22-98)||(40518624-40518700)
[»] chr1 (5 HSPs)
chr1 (20-104)||(1187402-1187486)
chr1 (32-104)||(1188638-1188710)
chr1 (22-73)||(32594756-32594807)
chr1 (21-78)||(26661561-26661618)
chr1 (20-104)||(30576621-30576705)
[»] chr7 (4 HSPs)
chr7 (32-73)||(21619095-21619136)
chr7 (22-70)||(9901713-9901761)
chr7 (20-104)||(15902336-15902420)
chr7 (20-104)||(37345954-37346038)
[»] chr3 (2 HSPs)
chr3 (63-104)||(260805-260846)
chr3 (52-129)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 2803210 - 2803404
Alignment:
Q  26 ggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttt 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2803210 ggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagacttt 2803309  T
Q  126 taacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803310 taacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaa 2803404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 33561489 - 33561573
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| || |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561489 tgagagagatatcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 29873575 - 29873659
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||| ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| ||||||||||||||||||    
T  29873575 tgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccactt 29873659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 13766899 - 13766795
Alignment:
Q  27 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagactt 124  Q
    |||| |||| ||| || |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| ||||||    
T  13766899 gacaccacattttaacacaaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagactt 13766800  T
Q  125 ttaac 129  Q
     ||||    
T  13766799 ctaac 13766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28254276 - 28254353
Alignment:
Q  21 gagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacct 98  Q
    ||||| |||| |||||| ||||||||||| ||||| || |||||||||||||| |||   |||||  |||||||||||    
T  28254276 gagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataagatgttcaacct 28254353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 962716 - 962660
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctc 78  Q
    |||| |||| |||||| ||||||||||| |||||||| || ||||||||||| ||||    
T  962716 agagtgacaacacactcttacccaaaaccttaagacaatgggtttatgggtcctctc 962660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 31468797 - 31468841
Alignment:
Q  29 catcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    ||||||||| ||||||||||| ||||| || ||||||||||||||    
T  31468797 catcacactcttacccaaaaccttaaggcaatgagtttatgggtc 31468841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 8482044 - 8481962
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||| |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482044 agagagacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 5034876 - 5034943
Alignment:
Q  37 ttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    ||||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034876 ttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 10074401 - 10074454
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||||| |||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  10074401 tgagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtc 10074454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  63 gtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 6071240 - 6071168
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||| ||||||  ||||| || ||||||||||| |||||||  ||||| | ||||||||||||||||    
T  6071240 cacactcttatccaaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccactt 6071168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10074030 - 10074082
Alignment:
Q  21 gagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    ||||| |||| |||||||||||||||||| ||||| || || |||||||||||    
T  10074030 gagagagacaccacacttttacccaaaaccttaaggcaatgggtttatgggtc 10074082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 10351216 - 10351325
Alignment:
Q  27 gacatcacacttttacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagactt 124  Q
    ||||||||||||||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   ||||||||||||    
T  10351216 gacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgtgagactt 10351315  T
Q  125 ttaacctaca 134  Q
     |||| ||||    
T  10351316 ctaacttaca 10351325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35150126 - 35150073
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||||| |||| |||||||||||||||||| |||||||| ||  ||||||||||    
T  35150126 tgagagagacaccacacttttacccaaaaccttaagacaatggatttatgggtc 35150073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 36522275 - 36522356
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctcca 101  Q
    |||||| |||| |||||| ||||||||||| |||||| | || |||||| |||| ||||  ||||| |||||||||| ||||    
T  36522275 tgagagagacaccacactcttacccaaaaccttaagataatgggtttattggtcctctcacttataaaatgttcaacttcca 36522356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 36521946 - 36522018
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||||||||||| ||||| || |  ||||||||||| |||| |||| ||| ||||||||||| ||||    
T  36521946 cacactcttacccaaaaccttaaggcaattggtttatgggtcctctcatttaaagagtgttcaacctcaactt 36522018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  51 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 129  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 23630424 - 23630348
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaac 96  Q
    ||||||||| ||||||||||||||||||   ||||||| ||||||||||| ||| ||||  ||||| | ||||||||    
T  23630424 tgagagggaaatcacacttttacccaaagtcttaagacgttgagtttatgagtcgtctcacttataaagtgttcaac 23630348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 22028407 - 22028458
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||| |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028407 agagagacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  32 cacacttttacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 15841404 - 15841488
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||||||||||| ||||||||||| ||||| || || |||||||  || ||||  ||| | | ||||||||||||||||    
T  15841404 tgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttcaacctccactt 15841488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 4154319 - 4154402
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||||||||||  ||||||||||  ||||| || |||||||||||||| ||||  ||||| | ||||||||||||||||    
T  4154319 tgagagagacatcacacacttacccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccactt 4154402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 40518700 - 40518624
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacct 98  Q
    |||| ||| ||||||| ||||||||||| ||||| ||||| ||||||||||| |||  ||||||   ||||||||||    
T  40518700 agagtgacgtcacactcttacccaaaaccttaagtcattgggtttatgggtcctcttatttataaggtgttcaacct 40518624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 1187402 - 1187486
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||| |||||||||||| |||||  |||||  | |||||||||||||| ||||  ||||| |||||| |||||||||||    
T  1187402 tgagagagacgtcacacttttactcaaaatcttaaggtaatgagtttatgggtcttctcacttataaaatgtttaacctccactt 1187486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||||||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 32594756 - 32594807
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||| |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594756 agagagacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 26661561 - 26661618
Alignment:
Q  21 gagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctc 78  Q
    ||||| |||| |||||| ||||||||||| ||||| || |||||||||||||| ||||    
T  26661561 gagagagacaccacactcttacccaaaaccttaaggcaatgagtttatgggtcctctc 26661618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 30576621 - 30576705
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||||| ||| ||||||||||||| ||||||||||  || |||||||| ||||  | ||| | ||||||||||| ||||    
T  30576621 tgagagagacattacatttttacccaaaacattaagacattatgtctatgggtcctctcactcataaagtgttcaacctctactt 30576705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  32 cacacttttacccaaaacgttaagacattgagtttatgggtc 73  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9901761 - 9901713
Alignment:
Q  22 agagggacatcacacttttacccaaaacgttaagacattgagtttatgg 70  Q
    |||| |||| |||||| ||||||||||| |||||||| |||||||||||    
T  9901761 agagagacaccacactcttacccaaaaccttaagacaatgagtttatgg 9901713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 15902420 - 15902336
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| |||| |||||||||| ||||||| ||||||||  ||| ||||| || || ||  ||||| | ||||||||||||||||    
T  15902420 tgagagcgacaccacacttttatccaaaaccttaagacaacgagcttatgtgtgatttcacttataaagtgttcaacctccactt 15902336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 37346038 - 37345954
Alignment:
Q  20 tgagagggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||| ||| ||||||| |||| |||||| ||||| || |  ||||||||||| ||||  ||||| |||||| |||||||||||    
T  37346038 tgagagagacgtcacactcttactcaaaactttaaggcaatatgtttatgggtcttctcacttataaaatgtttaacctccactt 37345954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  63 gtttatgggtcatctcttttatagaatgttcaacctccactt 104  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  52 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 129  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University