View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_239 (Length: 240)
Name: NF8548A_low_239
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_239 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 13244106 - 13244251
Alignment:
| Q |
7 |
agagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttat |
106 |
Q |
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| T |
13244106 |
agagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttat |
13244205 |
T |
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| Q |
107 |
tgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa |
152 |
Q |
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| T |
13244206 |
tgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa |
13244251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 13244450 - 13244533
Alignment:
| Q |
157 |
ttgataagcttgtttaccttcatggagccatatgtgaaaccttcatgctattccctcctctggcatttcagtaccagtgtgcta |
240 |
Q |
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| T |
13244450 |
ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgcta |
13244533 |
T |
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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 13080788 - 13080877
Alignment:
| Q |
151 |
aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttcatgctattccctcctctggcatttcagtaccagtgtgcta |
240 |
Q |
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| T |
13080788 |
aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgcta |
13080877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
| Q |
83 |
gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa |
152 |
Q |
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| T |
12963575 |
gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa |
12963644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
| Q |
78 |
gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag |
145 |
Q |
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| T |
19278827 |
gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag |
19278894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 19279089 - 19279139
Alignment:
| Q |
149 |
gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaacctt |
199 |
Q |
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| T |
19279089 |
gaaagagcttgataagctagtttatcttcatggagctatatgtgaagcctt |
19279139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 19278729 - 19278809
Alignment:
| Q |
7 |
agagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga |
87 |
Q |
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| T |
19278729 |
agagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga |
19278809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 12963797 - 12963841
Alignment:
| Q |
150 |
aaagagcttgataagcttgtttaccttcatggagccatatgtgaa |
194 |
Q |
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| T |
12963797 |
aaagggcttgataagcttgtttatcttcatggagctatttgtgaa |
12963841 |
T |
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