View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_241 (Length: 239)

Name: NF8548A_low_241
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_241
NF8548A_low_241
[»] chr2 (1 HSPs)
chr2 (137-215)||(41823074-41823152)
[»] chr6 (2 HSPs)
chr6 (18-76)||(32680695-32680753)
chr6 (75-142)||(32680984-32681055)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 41823074 - 41823152
Alignment:
Q  137 ccaaactctagctatgaaatcaatggaaggactctactgaaattaacaggtgaaaagcatgtaaaatctgcaataatct 215  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41823074 ccaaactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatct 41823152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 32680695 - 32680753
Alignment:
Q  18 atatatattcaacataagactgcttcatacatgtcaaggctcaacataattcatagcat 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32680695 atatatattcaacataagactgcttcatacatgtcaaggctcaacataattcatagcat 32680753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 32680984 - 32681055
Alignment:
Q  75 ataatgaaaaggataacaataggacatggta----atagatagaaaagaaaatttcgatggcaacaccaaac 142  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||| ||||    
T  32680984 ataatgaaaaggataacaataggacatggtaatatatagatagaaaagaaaatttcaatggcaacacaaaac 32681055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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