View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_245 (Length: 239)
Name: NF8548A_low_245
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_245 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 422539 - 422762
Alignment:
| Q |
14 |
acatcatcattcagtttaaaactgcacatccatgttaatatgtggggactggggatagagttcaagatcattatcatcaaatgatgtgaacgggcagaac |
113 |
Q |
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| T |
422539 |
acatcatcattcagtttaaaactgcacatccatgttaatatgtggggactggggacagagttcaagatcattatcatcaaatgatgtgaacaggcagaac |
422638 |
T |
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| Q |
114 |
aaagcaaatgactctaactctaaatgtggtacgtactataagtnnnnnnnnnnnnnnnnnncatcccaagtacaagaaacacagatacagtatcatccat |
213 |
Q |
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| T |
422639 |
aaagcacatgactctaactctaaatgtggtacgtactataagt--aaaaaattaaaaaaaacatcccaagtacaagaaacacagatagagtatcatccat |
422736 |
T |
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| Q |
214 |
caaaggctgtaagtaaatcctcttag |
239 |
Q |
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|||||| |||| |||||||||||||| |
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| T |
422737 |
caaaggttgtatgtaaatcctcttag |
422762 |
T |
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