View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_25 (Length: 421)
Name: NF8548A_low_25
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Complemental strand, 28054434 - 28054034
Alignment:
| Q |
23 |
cgacgacgacggagaaaagtgattcgcacgtgtgtacgtgcaaattaacaagcgatatcgtttgtaattgcaagtgcaggttcgtttgggttggtggttn |
122 |
Q |
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| T |
28054434 |
cgacgacgacggagaaaagtgattcgcacgtgtgtacgtgcaaattaacaagcgagattgtttgtaattgcaagtgcaggttcgtttgggttggtggtta |
28054335 |
T |
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| Q |
123 |
nnnnnnnn----cagttagagatcatcacggttattttgtgaaactctcaacaagaaagaaaaggagaatgcctcacagagcaacttacttttttcctag |
218 |
Q |
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| T |
28054334 |
aaaaaaaaaaaacagttagagatcatcacggttattttgtgaaactctcaacaagaaagaaaagga--atgcctcacagagcaacttacttttttcctag |
28054237 |
T |
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| Q |
219 |
gcaatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaacaaaaaatctccagtcaaatctacggatacgactttttgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28054236 |
gcaatttccagagaaaaggttcgatgaatcttcaaagagtagtacattagatcacgagaagaaaaaatctccagtcaaatctacggatacgactttttgc |
28054137 |
T |
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| Q |
319 |
attgaaaacgacctgccgaaaagttcaaacactcctaccaaagacaatctcgcaaaaaactctgcggtttcggaacttggtaaaaagtttcgaaatgaac |
418 |
Q |
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| T |
28054136 |
actgaaaacgacgtgccgaaaagttcaaacactcctaccaaagtcaatctcgcaaaaaactctgcggtttcggaacttggtaaaaagtttcgaaatgaac |
28054037 |
T |
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| Q |
419 |
aga |
421 |
Q |
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| T |
28054036 |
aga |
28054034 |
T |
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