View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_250 (Length: 237)
Name: NF8548A_low_250
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_250 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 23329849 - 23329628
Alignment:
| Q |
11 |
ttaccacaccattggtcccaccagcagccccaccatccatgtcacctcctacttcactctccatagttaccacattaccctcatctcccttattgtcttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23329849 |
ttaccacaccattggtcccaccagcagccccaccatccatgtcacctcctacttcactctccatagttaccacattaccctcatctcccttattttcttc |
23329750 |
T |
|
| Q |
111 |
attttccaccataacatcatcacatctctctttatcacaaaaaacctcagaacttccctctttctccaccataatctcagcacttccctctttctccacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||| |
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| T |
23329749 |
attttccaccataacatcatcacatctctctttatcacaaaaaacctcagaacttccctctctatcaaccataatctcagcacttcccactttctccacc |
23329650 |
T |
|
| Q |
211 |
atatactcaacacttccctgat |
232 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
23329649 |
atatcctcaacacttccctgat |
23329628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 20621487 - 20621266
Alignment:
| Q |
8 |
caattaccacaccattggtcccaccagcagccccaccatccatgtcacctcctacttcactctccatagttaccacattaccctcatctcccttattgtc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20621487 |
caattaccacaccattggtcccaccagcagccccaccatccatgtcacctcctacttcactctccatagttaccacattaccctcatctcccttattttc |
20621388 |
T |
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| Q |
108 |
ttcattttccaccataacatcatcacatctctctttatcacaaaaaacctcagaacttccctctttctccaccataatctcagcacttccctctttctcc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
20621387 |
ttcattttccaccataacatcatcacatctctctttatcacaaaaaacctcagaacttccctctctatcaaccataatctcagcacttccctctttctcc |
20621288 |
T |
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| Q |
208 |
accatatactcaacacttccct |
229 |
Q |
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|||||| |||| ||||||||| |
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| T |
20621287 |
accataatctcagcacttccct |
20621266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 20621309 - 20621233
Alignment:
| Q |
156 |
ctcagaacttccctctttctccaccataatctcagcacttccctctttctccaccatatactcaacacttccctgat |
232 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20621309 |
ctcagcacttccctctttctccaccataatctcagcacttccctctttctccaccatatactcaacacttccctgat |
20621233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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