View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_257 (Length: 235)
Name: NF8548A_low_257
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_257 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36163117 - 36162890
Alignment:
| Q |
1 |
gttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagacagatag |
100 |
Q |
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| T |
36163117 |
gttacatagttataccacagcatagtttaaaatagggcaaaattaacaagcgtgtaaaaatacaaggcacatccaattgtcaagaactcaagtcagatag |
36163018 |
T |
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| Q |
101 |
tttagtaaaaatacaaggccagtcttaatcaacttaaatgcagtaagacggat-nnnnnnnggacagcaagaggtttcaccttaaggagatacagctggg |
199 |
Q |
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| T |
36163017 |
tttagtaaaaatacaaggccagtcttaatcaactttaatgcagtaagacggataaaaaaaaggacagcaagaggcttcaccttaaggagatacagctggg |
36162918 |
T |
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| Q |
200 |
tcaaattcaagttgacacatgatagagc |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36162917 |
tcaaattcaagttgacacatgatagagc |
36162890 |
T |
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