View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_266 (Length: 233)

Name: NF8548A_low_266

Description: NF8548A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8548A_low_266

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 190; E-Value: 1e-103

Query Start/End: Original strand, 21 - 214

Target Start/End: Original strand, 38145217 - 38145410

Alignment:

Q	21	atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctcaggtgtttggcaccatctacaccgaaa	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38145217	atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa	38145316	T

Q	121	cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38145317	cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtg	38145410	T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 118 - 214

Target Start/End: Complemental strand, 11787506 - 11787410

Alignment:

Q	118	aaacccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagtg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11787506	aaacccgaattcatattcacacccttaaccgattcacatgtccaagtagctgttacttgttcaaagaaacttggtattcatctaagagtaagaagtg	11787410	T

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