View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_268 (Length: 231)
Name: NF8548A_low_268
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_268 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 38224922 - 38224712
Alignment:
| Q |
14 |
actaatagcaatttaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacaca |
113 |
Q |
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| T |
38224922 |
actaatcgcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccctcaaatttatacaca |
38224823 |
T |
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| Q |
114 |
cgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtgtaacaatttaccatattctaaggtccaggtattgtttccttta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38224822 |
cgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtggaacaatttaccatagtctaaggtccaggtattgtttccttta |
38224723 |
T |
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| Q |
214 |
gtcttgatatt |
224 |
Q |
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||||||||||| |
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| T |
38224722 |
gtcttgatatt |
38224712 |
T |
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