View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_270 (Length: 230)
Name: NF8548A_low_270
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_270 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40153950 - 40153800
Alignment:
| Q |
1 |
gtaactccagaaattggtgtttctggtgttggtattgcaatggcagtatatggggcttttgatggaatagtaagttttgacatagaatgcaaaactgtat |
100 |
Q |
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| T |
40153950 |
gtaactccagaaattggtgtttctggtgttggtattgcaatggcagtatatggggcttttgatggaatagtaagttttgacatagaatgcaaaactgtat |
40153851 |
T |
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| Q |
101 |
ttccttgagtggtggttcaaaagcgatttgattacatcatgtttgcgagca |
151 |
Q |
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| T |
40153850 |
ttccttgagtggtggttcaaaagcgatttgattacatcatgtttgcgagca |
40153800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 40147308 - 40147170
Alignment:
| Q |
1 |
gtaactccagaaattggtgtttctggtgttggtattgcaatggcagtatatggggcttttgatggaatagtaagttttgacatagaatgcaaaactgtat |
100 |
Q |
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| T |
40147308 |
gtaactccagcaattggtgtttctggtgttggtattgcaatggcagcatatggggcttttgatggaatagtaagtattgagatggaatgaaaaactgtaa |
40147209 |
T |
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| Q |
101 |
ttccttgagtggtggttcaaaagcgatttgattacatca |
139 |
Q |
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| T |
40147208 |
ttccttaggtggtggttcgaaagtgacttgactacatca |
40147170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40109419 - 40109345
Alignment:
| Q |
1 |
gtaactccagaaattggtgtttctggtgttggtattgcaatggcagtatatggggcttttgatggaatagtaagt |
75 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40109419 |
gtaactcctgcaattggagtttctggtgttggtattgcaatggcagcttatggggcttttgatggaatagtaagt |
40109345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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