View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_281 (Length: 230)

Name: NF8548A_low_281
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_281
NF8548A_low_281
[»] chr4 (10 HSPs)
chr4 (78-195)||(46550706-46550823)
chr4 (78-185)||(17056615-17056722)
chr4 (88-192)||(47541819-47541925)
chr4 (78-185)||(41464802-41464911)
chr4 (78-185)||(52920087-52920197)
chr4 (109-180)||(15827156-15827229)
chr4 (78-176)||(47833504-47833603)
chr4 (128-185)||(39503556-39503615)
chr4 (88-173)||(46381481-46381568)
chr4 (131-186)||(36364917-36364972)
[»] chr1 (10 HSPs)
chr1 (78-185)||(16253029-16253136)
chr1 (78-185)||(24241478-24241585)
chr1 (78-185)||(41942781-41942888)
chr1 (78-185)||(21356794-21356901)
chr1 (88-185)||(34773429-34773528)
chr1 (78-185)||(39744169-39744276)
chr1 (87-191)||(38746028-38746133)
chr1 (87-185)||(2344969-2345068)
chr1 (107-185)||(48503922-48504000)
chr1 (86-185)||(7101362-7101464)
[»] chr3 (9 HSPs)
chr3 (78-185)||(44880254-44880361)
chr3 (78-189)||(1994850-1994961)
chr3 (78-185)||(22220210-22220318)
chr3 (78-184)||(2008400-2008508)
chr3 (78-190)||(22831174-22831286)
chr3 (91-185)||(39056888-39056981)
chr3 (109-185)||(26466362-26466438)
chr3 (128-185)||(45805583-45805640)
chr3 (78-165)||(28297695-28297782)
[»] chr7 (7 HSPs)
chr7 (78-189)||(8541427-8541539)
chr7 (78-185)||(34998528-34998637)
chr7 (106-185)||(39187986-39188065)
chr7 (78-185)||(10544991-10545100)
chr7 (78-185)||(45627414-45627524)
chr7 (128-180)||(32676800-32676852)
chr7 (139-195)||(15878797-15878853)
[»] chr8 (11 HSPs)
chr8 (78-189)||(42056676-42056787)
chr8 (90-189)||(39402038-39402140)
chr8 (78-197)||(30208187-30208307)
chr8 (78-190)||(5594779-5594891)
chr8 (78-184)||(1162117-1162222)
chr8 (88-190)||(35179155-35179258)
chr8 (78-185)||(40719895-40720005)
chr8 (78-188)||(31333162-31333273)
chr8 (90-167)||(42921385-42921462)
chr8 (86-185)||(36132676-36132775)
chr8 (90-141)||(30362030-30362082)
[»] chr5 (12 HSPs)
chr5 (78-185)||(33758794-33758901)
chr5 (90-166)||(23151442-23151518)
chr5 (90-190)||(2976458-2976556)
chr5 (87-175)||(30319817-30319906)
chr5 (78-176)||(34849451-34849550)
chr5 (78-185)||(20524604-20524711)
chr5 (86-185)||(10719746-10719846)
chr5 (148-188)||(37872302-37872342)
chr5 (78-165)||(37872201-37872291)
chr5 (80-192)||(8026460-8026577)
chr5 (90-177)||(3454259-3454346)
chr5 (78-136)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (92-185)||(36400857-36400952)
chr2 (78-185)||(3870024-3870135)
chr2 (78-185)||(11028779-11028887)
chr2 (91-185)||(38879517-38879612)
chr2 (78-191)||(28734070-28734183)
chr2 (78-185)||(37721449-37721557)
chr2 (91-185)||(3647418-3647513)
chr2 (106-184)||(30706182-30706258)
chr2 (137-185)||(6512143-6512191)
chr2 (90-139)||(3949329-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (90-189)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (78-185)||(2141240-2141348)
chr6 (90-190)||(7080148-7080250)
chr6 (91-185)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (106-185)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (106-193)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (78-185)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  178 gaagaatatctccttatt 195  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    ||||||| ||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 47541819 - 47541925
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| |||| |||||||    
T  47541819 aggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaata 47541918  T
Q  186 tctcctt 192  Q
    |||||||    
T  47541919 tctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 175  Q
    ||||||| ||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  176 tggaagaata 185  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  78 aataatacagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 174  Q
    ||||||| |||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  175 atggaagaata 185  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 15827156 - 15827229
Alignment:
Q  109 attgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 180  Q
    ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827156 attgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 175  Q
    ||||||| ||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 39503556 - 39503615
Alignment:
Q  128 atctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||||  || |||||||| ||||||||| ||||||||||||| ||||||||    
T  39503556 atctttttatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 173  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 36364917 - 36364972
Alignment:
Q  131 tttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||| ||||| | ||||||||||||||||||||||| ||||||| || |||||    
T  36364917 tttttatatgtgtgtccaaacattattgatttggtcttgcgaccatgcaacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  178 gaagaata 185  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  178 gaagaata 185  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  178 gaagaata 185  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  178 gaagaata 185  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 34773429 - 34773528
Alignment:
Q  88 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||||||||||||    
T  34773429 aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  178 gaagaata 185  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  186 tctcct 191  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 2345068 - 2344969
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||    
T  2345068 gaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgaccaaggaagaat 2344970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  107 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 7101362 - 7101464
Alignment:
Q  86 agaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatggaag 181  Q
    |||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| ||||| ||    
T  7101362 agaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgggag 7101460  T
Q  182 aata 185  Q
    ||||    
T  7101461 aata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  178 gaagaata 185  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| ||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  178 gaagaatatctc 189  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 175  Q
    |||||||  ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  176 tggaagaat 184  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  178 gaagaatatctcc 190  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 39056888 - 39056981
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||||||||||    
T  39056888 aaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatggaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  109 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  128 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 165  Q
    ||||||| |||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  78 aataatacagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  177 ggaagaatatctc 189  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttat--gtgtgtattcaaacattattgatttggtcttgtgacca 175  Q
    |||||||  ||| |||||||||||||| |||||||||||||| |||||||||||||||||  |||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  176 tggaagaata 185  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  78 aataatacagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 175  Q
    ||||||| ||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  176 tggaagaata 185  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 174  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  175 atggaagaata 185  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  128 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 180  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  139 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 195  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  178 gaagaatatctc 189  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  90 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  187 ctc 189  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 30208307 - 30208187
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 175  Q
    |||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| ||||||    
T  30208307 aataataaggaggaaattgataaaaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgacca 30208209  T
Q  176 tggaagaatatctccttattct 197  Q
    |||||||||| |||| ||||||    
T  30208208 tggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||  ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  178 gaagaatatctcc 190  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| ||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  178 gaagaat 184  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 35179258 - 35179155
Alignment:
Q  88 aggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||| |||||||     
T  35179258 aggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccatgaaagaatac 35179159  T
Q  187 ctcc 190  Q
    ||||    
T  35179158 ctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 174  Q
    |||||||  |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  175 atggaagaata 185  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 175  Q
    |||||||  ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  176 tggaagaatatct 188  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 42921462 - 42921385
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 167  Q
    |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921462 gaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 36132775 - 36132676
Alignment:
Q  86 agaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || ||||||||    
T  36132775 agaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaata 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 30362030 - 30362082
Alignment:
Q  90 gaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 141  Q
    |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362030 gaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| | |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  178 gaagaata 185  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 23151442 - 23151518
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 166  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151442 gaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 2976458 - 2976556
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctc 189  Q
    ||||||||||||||  ||||||||||||||  ||||  ||||||||||||||||   |||||| ||||||||||||||| |||||||||||||||| |||    
T  2976458 gaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttatgaccatggaagaatacctc 2976555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 30319906 - 30319817
Alignment:
Q  87 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 175  Q
    ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319906 gaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    ||||||| ||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  178 gaagaata 185  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 10719846 - 10719746
Alignment:
Q  86 agaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    |||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||||||||||    
T  10719846 agagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccatggaagaat 10719747  T
Q  185 a 185  Q
    |    
T  10719746 a 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  148 aaacattattgatttggtcttgtgaccatggaagaatatct 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 165  Q
    |||||||  |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  80 taatacagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 174  Q
    ||||| ||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  175 atggaagaatatctcctt 192  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 3454346 - 3454259
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 177  Q
    |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454346 gaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  78 aataatacagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 136  Q
    |||||||  |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  92 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 173  Q
    |||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  174 catggaagaata 185  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 38879612 - 38879517
Alignment:
Q  91 aaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||    
T  38879612 aaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactatggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    ||||||| ||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  177 ggaagaatatctcct 191  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  78 aataatacagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 3647513 - 3647418
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || ||||||||||||||||||||||||||||||| |||||||||    
T  3647513 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgaccaaggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 30706182 - 30706258
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 184  Q
    ||||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||||||| ||||||    
T  30706182 atgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtgaccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 6512143 - 6512191
Alignment:
Q  137 tgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||| | |||||| ||||||||||||||||||||||||||| ||||    
T  6512143 tgtgtgtgtccaaacactattgatttggtcttgtgaccatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 3949329 - 3949378
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 139  Q
    ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949329 gaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  90 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 186  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  187 ctc 189  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  78 aataatacagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 176  Q
    |||||||  |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  177 ggaagaata 185  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 7080250 - 7080148
Alignment:
Q  90 gaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaatatc 187  Q
    |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||| |||||||| |    
T  7080250 gaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaagaatacc 7080151  T
Q  188 tcc 190  Q
    |||    
T  7080150 tcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  91 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 185  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  106 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 193  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 57 - 165
Alignment:
Q  78 aataatacagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 175  Q
    ||||||| ||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  176 tggaagaata 185  Q
    ||||||||||    
T  156 tggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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