View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_291 (Length: 229)
Name: NF8548A_low_291
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_291 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2272694 - 2272472
Alignment:
| Q |
1 |
tcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272694 |
tcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattt |
2272595 |
T |
|
| Q |
101 |
tggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272594 |
tggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacat |
2272495 |
T |
|
| Q |
201 |
cgtgtccctaatcctaaccctaa |
223 |
Q |
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||||||||||| ||||||||||| |
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| T |
2272494 |
cgtgtccctaaccctaaccctaa |
2272472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2274252 - 2274030
Alignment:
| Q |
1 |
tcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274252 |
tcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattt |
2274153 |
T |
|
| Q |
101 |
tggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274152 |
tggtaaatttatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacat |
2274053 |
T |
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| Q |
201 |
cgtgtccctaatcctaaccctaa |
223 |
Q |
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||||||||||| ||||||||||| |
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| T |
2274052 |
cgtgtccctaaccctaaccctaa |
2274030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 373328 - 373535
Alignment:
| Q |
16 |
agaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggt |
115 |
Q |
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|||||||||||| | | ||||||| || |||| ||||| ||||| |||||||||| | | |||||||||||| |||||||||||||| |||||||||| |
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| T |
373328 |
agaggtttaagaaaatagttgtgactacaatgagtttatccttggtattgattatgatcggtgcaatgaatatgtcatcatattttgggaaattcatggc |
373427 |
T |
|
| Q |
116 |
acaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcct |
215 |
Q |
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||||| ||| |||||||||||||||| || |||||||||||| | ||||||||||||||| | ||| || ||||||||||||||||| || ||| |
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| T |
373428 |
ggaacatgacactgctgtgatgctcatactcattgctgttgttttcttatttcaaatagcacttggttatggtaggacactacatcgtgtcccaaaccct |
373527 |
T |
|
| Q |
216 |
aaccctaa |
223 |
Q |
| |
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|||||||| |
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|
| T |
373528 |
aaccctaa |
373535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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