View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8548A_low_295 (Length: 229)
Name: NF8548A_low_295
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_295 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9440288 - 9440514
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440288 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
9440387 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440388 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
9440487 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9440488 |
acataccgcaacacctgaggttccttt |
9440514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24594688 - 24594914
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || |||||||| | || |||||||| || | |||||| || ||||| ||||||| |||||||||| |
|
|
| T |
24594688 |
gcttccttgcaagcttgtgtagctgccatatattcagcttctgtagtagatagagctacgacagattgtaattttgacaatcaacttatcgctcctcctg |
24594787 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||| |
|
|
| T |
24594788 |
caagtgtgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaa |
24594887 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| || |||||||||| |
|
|
| T |
24594888 |
acataatgcaacatctaaggttccttt |
24594914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27874906 - 27875132
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874906 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
27875005 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875006 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
27875105 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27875106 |
acataccgcaacacctgaggttccttt |
27875132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26977090 - 26977316
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977090 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctg |
26977189 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977190 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
26977289 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26977290 |
acataccgcaacacctgaggttccttt |
26977316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1472662 - 1472887
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || |||||||| | || |||||||| || || |||| || ||||||||||||||||||||||||| |
|
|
| T |
1472662 |
gcttccttgcaagcttgcgtagctgccatatattcagcttctgtagtagagagagctacgacaatt-gtaattttgacaaccaacttactgctcctcctg |
1472760 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | || || |||||| ||| |
|
|
| T |
1472761 |
caagtgtgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaacataacctttgacgataaattccaatcctctgaa |
1472860 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| || |||||||||| |
|
|
| T |
1472861 |
acataatgcaacatctaaggttccttt |
1472887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 21965457 - 21965303
Alignment:
| Q |
47 |
ttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatcttcttttatcatgatc |
146 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| || || ||||||||||||||| ||| |||| ||| |||| ||||||||||| |
|
|
| T |
21965457 |
ttgacagagctacaatagtttgtaacttgggtaaccaacttactgctcatcttggaagcgtgaacacatatccaatagttgattttctattatcatgatc |
21965358 |
T |
|
| Q |
147 |
acctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaa |
201 |
Q |
| |
|
| |||||||| ||||||| ||||||||||| |||||||| | ||||||||||| |
|
|
| T |
21965357 |
aagtgcaaaattcgaatcaatataacccctgatagttaactttaatcctccgaaa |
21965303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18967222 - 18967120
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
18967222 |
gcttcattgcatgcttgggtagctgcaatgtactcagcttctgtcgttgacagagctacaacag-ttgtaacttggataaccaacttactgctcctcctg |
18967124 |
T |
|
| Q |
101 |
caag |
104 |
Q |
| |
|
|||| |
|
|
| T |
18967123 |
caag |
18967120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41722530 - 41722304
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722530 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
41722431 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722430 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
41722331 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41722330 |
acataccgcaacacctgaggttccttt |
41722304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34356130 - 34355904
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356130 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctg |
34356031 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356030 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
34355931 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
|||||| ||||||||| |||||||||| |
|
|
| T |
34355930 |
acatactgcaacacctaaggttccttt |
34355904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42270023 - 42269797
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270023 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
42269924 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269923 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
42269824 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42269823 |
acataccgcaacacctgaggttccttt |
42269797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48698018 - 48698244
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698018 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
48698117 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698118 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
48698217 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48698218 |
acataccgcaacacctgaggttccttt |
48698244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30946380 - 30946606
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946380 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
30946479 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946480 |
taagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
30946579 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30946580 |
acataccgcaacacctgaggttccttt |
30946606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2003003 - 2002777
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||| || || |||||||| | || |||||||| || | |||||| || ||||||||||||||||||||||||| |
|
|
| T |
2003003 |
gcttccttgcaagcttgcatagctgccatatattcagcttctgtagtagatagagctacgacagattgtaattttgacaaccaacttactgctcctcctg |
2002904 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||| |
|
|
| T |
2002903 |
caagtgtgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaa |
2002804 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| || |||||||||| |
|
|
| T |
2002803 |
acataatgcaacatctaaggttccttt |
2002777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5819472 - 5819698
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819472 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctcctg |
5819571 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819572 |
caagcgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
5819671 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5819672 |
acataccgcaacacctgaggttccttt |
5819698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 54545265 - 54545039
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54545265 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgtcgttgacagagctacaacagtttgtaacttggacaaccaacttactgctcctccgg |
54545166 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545165 |
caagtgtgaacacataaccagtagtagattttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
54545066 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
54545065 |
acataccgcaacacctgaggttccttt |
54545039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42589068 - 42588842
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || |||||||| | || |||||||| || | |||||| || |||||||||||||| |||||||||| |
|
|
| T |
42589068 |
gcttccttgcaagcttgcgtagctgccatatattcagcttctgtagtagatagagctacgacagattgtaattttgacaaccaacttaccgctcctcctg |
42588969 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| || |
|
|
| T |
42588968 |
caagtgtgaacacataaccagcagtagatcttcttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgac |
42588869 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| || |||||||||| |
|
|
| T |
42588868 |
acataatgcaacatctaaggttccttt |
42588842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 25880348 - 25880233
Alignment:
| Q |
65 |
tttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatc |
164 |
Q |
| |
|
||||||| || ||||||||||||| |||||||| |||||| |||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
25880348 |
tttgtaattttgacaaccaacttattgctcctcttgcaagtgtgaacacataaccggtattagatattcttttatcacgatcacctataaaatctgaatt |
25880249 |
T |
|
| Q |
165 |
aacataacccctgaca |
180 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
25880248 |
aacaaaacccttgaca |
25880233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 25880915 - 25880790
Alignment:
| Q |
52 |
agagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtaga---tcttcttttatcatgatcac |
148 |
Q |
| |
|
||||| ||||| ||||||| || ||||||||||||| ||||||||||||||| ||||||||||||| |||||||| | || |||||||| |||| | |
|
|
| T |
25880915 |
agagcgacaacaatttgtaattttgacaaccaacttattgctcctcctgcaagtatgaacacataaccggtagtagattttttttttttatcaagatctc |
25880816 |
T |
|
| Q |
149 |
ctgcaaaatctgaatcaacataaccc |
174 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
25880815 |
ctgcaaaatctgaatctacataaccc |
25880790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 829599 - 829373
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
829599 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgtcgttgacagagctacaacagtttgtaacttggataaccaacttactgctcctcctg |
829500 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829499 |
caagcgtgaacacataaccagtagtagattttcttttatcctgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
829400 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
829399 |
acataccgcaacacctggggttccttt |
829373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 28715203 - 28714977
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| | |||||| ||||||||| |||||||||||||| ||||||||||||||||||| | |
|
|
| T |
28715203 |
gcttccttgcatgcttgggtagctgccatgtactcagcttctgacgttgacatagctacaacagtttgtaacttggataaccaacttactgctcctctcg |
28715104 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||||| ||||||| ||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
28715103 |
caagcatgaacacgtaaccagtaaaagattttctttcatcatgatcaccggcaaaatctgaatcaacataacccatgacaattaactctgatcctccgaa |
28715004 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| ||||||| |||||||||||| |
|
|
| T |
28715003 |
acatattgcaacacatgaggttccttt |
28714977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 13841187 - 13841344
Alignment:
| Q |
69 |
taacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaaca |
168 |
Q |
| |
|
||||||||| ||||||||||| ||||||| | || ||||||||||||| |||||| || || | ||||||||||||| || |||||||||||||||| |
|
|
| T |
13841187 |
taacttggataaccaacttaccgctcctcgtataaacgtgaacacataatcagtag---attttatattatcatgatcacttgtaaaatctgaatcaaca |
13841283 |
T |
|
| Q |
169 |
taacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttga |
229 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
13841284 |
taacccttgtcatttaactctgatcctccgaaacatattgcaacacttgaggtttctttga |
13841344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28232 - 28458
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28232 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcgttgacagagctacaacagtttgtaacttggataaccaacttactgctcctcctg |
28331 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28332 |
aaagtgtgaacacataatcagtagtagattttcttttatcatgatcacctacaaaatctgaatcaacataacccctgacagttaactctgatcctctgaa |
28431 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| | ||||||||||| |
|
|
| T |
28432 |
acatattgcaacatccgaggttccttt |
28458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2324304 - 2324530
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
2324304 |
gcttccttgcatgcttgggtagctgccatgtacttagcttctgtcgttgacaaagctacaacagtttgtaacttggataactaacttacaactcctcctg |
2324403 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| | | |||| || |||||||||||||||||||| |
|
|
| T |
2324404 |
caagtgtgaacacataactagtagtagattttcttttatcatgatcacctgcaaaatctgactcaagaaatcccccaacggttaactctgatcctccgaa |
2324503 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
2324504 |
acatattgcaacacctgaggttccttt |
2324530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7504960 - 7505186
Alignment:
| Q |
1 |
gcttccttgcatgcttgagtagctgccatgtactccgcttctgtcattgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctg |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || |||||||| | || |||||||| || |||||| || ||||| |||||||| |||||||||| |
|
|
| T |
7504960 |
gcttccttgcaagcttgcgtagctgccatatattcagcttctgtagtagatagagctacgacaaattgtaattttgacaatcaacttaccgctcctcctg |
7505059 |
T |
|
| Q |
101 |
caagcgtgaacacataaccagtagtagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||| |
|
|
| T |
7505060 |
caagtgtgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaa |
7505159 |
T |
|
| Q |
201 |
acataccgcaacacctgaggttccttt |
227 |
Q |
| |
|
||||| |||||| || |||||||||| |
|
|
| T |
7505160 |
acataatgcaacatctaaggttccttt |
7505186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 22509991 - 22509836
Alignment:
| Q |
47 |
ttgacagagctacaaccgtttgtaacttggacaaccaacttactgctcctcctgcaagcgtgaacacataaccagtagtagatcttctttt--atcatga |
144 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||| |||||||||||| | ||| ||||| ||||| ||||| || || |||| ||||||| |
|
|
| T |
22509991 |
ttgacagagcttcaacaattggtaacttggacaaccaaattactgctcctcttacaaatgtgaa-----aaccaatagtatatatttttttcaatcatga |
22509897 |
T |
|
| Q |
145 |
tcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacata |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||||||||| |
|
|
| T |
22509896 |
tcaccttcaaaatctgaatcaacataacacctaatggttaactttgatcctccgaaacata |
22509836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 34973530 - 34973428
Alignment:
| Q |
125 |
tagatcttcttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcc |
224 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||||||| ||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
34973530 |
tagattttcttttattatgatcatctgcaaaatctgaatcgacataacccctaacagttaaatttgatcctccgaatcatattgcaacacctgaggttcc |
34973431 |
T |
|
| Q |
225 |
ttt |
227 |
Q |
| |
|
||| |
|
|
| T |
34973430 |
ttt |
34973428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University