View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_31 (Length: 415)
Name: NF8548A_low_31
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 32060458 - 32060103
Alignment:
| Q |
7 |
gagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacatccttagccttcaatccatcattataaagcaaccaaacaaagca |
106 |
Q |
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| T |
32060458 |
gagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagca |
32060359 |
T |
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| Q |
107 |
ttttattctttgagcccctcccatttccacacattattccaagtagagatacatcattgcgacatatcgtctaactactattgttaggaggaattttgat |
206 |
Q |
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| T |
32060358 |
ttttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttgat |
32060259 |
T |
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| Q |
207 |
acgcaaatcattagttttgataccattgttgagtcatgaggggagcccaatgaatcatcatgttggactaagagcaaacactcaagtgagtcaaacacta |
306 |
Q |
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| T |
32060258 |
acgcaaatcattagttttgataccattgttgagtcacgaggggagcccagtaaatcatcatgttggaccaagagcaaacactcaagtgagtcaaacacta |
32060159 |
T |
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| Q |
307 |
aatctttatctaaaattttaatacattagatatatcaatcttctcatttatgtgtt |
362 |
Q |
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| T |
32060158 |
gatctttatttaaaattttaatacattagatatatcaatcttctcatttatatgtt |
32060103 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 37258095 - 37258011
Alignment:
| Q |
71 |
cttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccacacattattccaagtagag |
154 |
Q |
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| T |
37258095 |
cttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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