View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_316 (Length: 222)
Name: NF8548A_low_316
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_316 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 32912752 - 32912537
Alignment:
| Q |
1 |
attaaatagcatcaaatttataaaagaaaacaataatccattacatacatcttcaggtaggtaaaagaaagacgaagaagcaaaaaggtgtttctgtcca |
100 |
Q |
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| T |
32912752 |
attaaatagcatcaaatttataaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtcca |
32912653 |
T |
|
| Q |
101 |
tttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912652 |
tttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccat |
32912553 |
T |
|
| Q |
201 |
taaagttagccccaga |
216 |
Q |
| |
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|||| ||||||||||| |
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| T |
32912552 |
taaaattagccccaga |
32912537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 32924684 - 32924530
Alignment:
| Q |
42 |
tacatacatcttcaggtaggtaaaagaaagacgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaatt |
141 |
Q |
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|
||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||| |||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
32924684 |
tacatacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaatt |
32924585 |
T |
|
| Q |
142 |
ttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
196 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |
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| T |
32924584 |
ctgatagggacatggataattcaatttaagagcctcacgaactatctttttgcat |
32924530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 32935684 - 32935523
Alignment:
| Q |
46 |
tacatcttcaggtaggtaaaagaaagacgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
145 |
Q |
| |
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||||||||||| ||||||| ||||| |||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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| T |
32935684 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
32935585 |
T |
|
| Q |
146 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagtt |
207 |
Q |
| |
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||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |||||||||| |
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| T |
32935584 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagtt |
32935523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 32927366 - 32927261
Alignment:
| Q |
102 |
ttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccatt |
201 |
Q |
| |
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|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||| ||||||| ||| |
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| T |
32927366 |
ttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatc |
32927267 |
T |
|
| Q |
202 |
aaagtt |
207 |
Q |
| |
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|||||| |
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|
| T |
32927266 |
aaagtt |
32927261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 32950302 - 32950186
Alignment:
| Q |
91 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
190 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || ||| ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32950302 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctct |
32950203 |
T |
|
| Q |
191 |
ttgcatccattaaagtt |
207 |
Q |
| |
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|||||| ||| |||||| |
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| T |
32950202 |
ttgcattcatcaaagtt |
32950186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 32943121 - 32943005
Alignment:
| Q |
91 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
190 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || || ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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|
| T |
32943121 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct |
32943022 |
T |
|
| Q |
191 |
ttgcatccattaaagtt |
207 |
Q |
| |
|
|||||| ||| |||||| |
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| T |
32943021 |
ttgcattcatcaaagtt |
32943005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 11825025 - 11824871
Alignment:
| Q |
42 |
tacatacatcttcaggtaggtaaaagaaagacgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaatt |
141 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| | |||| ||||||||| | | |||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
11825025 |
tacatacttctgcagctaggtaaaagaaaaatgaagcagcaaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaatt |
11824926 |
T |
|
| Q |
142 |
ttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
196 |
Q |
| |
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||||| ||||||||||| ||||||||||| |||| | ||| ||||||||||||| |
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| T |
11824925 |
ctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcat |
11824871 |
T |
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