View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8548A_low_320 (Length: 219)

Name: NF8548A_low_320
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8548A_low_320
NF8548A_low_320
[»] chr3 (3 HSPs)
chr3 (87-205)||(1636308-1636426)
chr3 (87-172)||(1636947-1637032)
chr3 (87-181)||(41827287-41827380)
[»] chr1 (2 HSPs)
chr1 (87-205)||(12215798-12215916)
chr1 (87-172)||(12215194-12215279)
[»] chr6 (2 HSPs)
chr6 (88-205)||(28007822-28007940)
chr6 (86-172)||(28008460-28008546)
[»] chr5 (1 HSPs)
chr5 (20-86)||(40923815-40923881)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 1636308 - 1636426
Alignment:
Q  87 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa 186  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  1636308 gagttcagatctgctccagttccaacttactccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaca 1636407  T
Q  187 tgttctcattaacaccaaa 205  Q
    |||||||||||||||||||    
T  1636408 tgttctcattaacaccaaa 1636426  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 1637032 - 1636947
Alignment:
Q  87 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 172  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1637032 gagttcagatctgctctagttcaaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa 1636947  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 41827287 - 41827380
Alignment:
Q  87 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcaga 181  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||| ||||||  |||||||||||||| | |||||||| ||||| ||| ||||    
T  41827287 gagttcagatctgctccatttccaacttgccttagttttcctgttc-tttgacagatgagcgacacgtgtcgaaacaattcatcaacggttcaga 41827380  T

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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 12215916 - 12215798
Alignment:
Q  87 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa 186  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |    
T  12215916 gagttcagatctgctccagttccaacttgctccacttttcctgttcttttgacggatgagcgacacgtggcaaaaaaattaatcaaaggtgcagagaaca 12215817  T
Q  187 tgttctcattaacaccaaa 205  Q
    |||||||||||||||||||    
T  12215816 tgttctcattaacaccaaa 12215798  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 12215194 - 12215279
Alignment:
Q  87 gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 172  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12215194 gagttcagatttgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa 12215279  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 28007822 - 28007940
Alignment:
Q  88 agttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaat 187  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  28007822 agttcagatctgctccagttccaacttgctccagttttcatgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaacat 28007921  T
Q  188 gtt-ctcattaacaccaaa 205  Q
    ||| |||||||||||||||    
T  28007922 gttcctcattaacaccaaa 28007940  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 28008546 - 28008460
Alignment:
Q  86 cgagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa 172  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  28008546 cgagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtgacaaaacaattaatcaa 28008460  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 40923881 - 40923815
Alignment:
Q  20 aaacaaaggatgatggtggggatgtatatttctaccaatcaacccatccttcaacagtcagggattc 86  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  40923881 aaacaaaggatgatggtggggatgtagatttctaccgatcaacccatccttcaacagtcagggattc 40923815  T

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