View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_321 (Length: 219)
Name: NF8548A_low_321
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_321 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 18455499 - 18455281
Alignment:
| Q |
1 |
agctggatcacttgctaaacccctaccagtgtaacccctctgccgttcgccatattgccttctatctagtccagaataacccaaactcttgtcaccatac |
100 |
Q |
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| T |
18455499 |
agctggatcacttgctaaatccctaccagtgtaaccactctgccgttcaccatattgccttctatctagtccagaataatccaaactcttgtcaccatac |
18455400 |
T |
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| Q |
101 |
aattgatcagatttgtggccatacccatgcgttgaggacgacaaataatcactagaagcaaacttgggtgaatctgaaacacccaaagagtagcttccac |
200 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18455399 |
aattgatcagatttgtggccatacacatgtgttgaggacgacaaataatcactagaagcaaacttgggtgaatctgatacacccaaagagtagcttccac |
18455300 |
T |
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| Q |
201 |
gagcatctaaagccgatga |
219 |
Q |
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||||||||||||||||||| |
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| T |
18455299 |
gagcatctaaagccgatga |
18455281 |
T |
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