View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_327 (Length: 216)
Name: NF8548A_low_327
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_327 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 35275133 - 35275002
Alignment:
| Q |
66 |
gagactaataatttgagggcatatcagcaatttaataaatattgtgtggagatttttgagagtttgtttaattacagggtctaggtcataaaagttgact |
165 |
Q |
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| T |
35275133 |
gagactaataatttgagggcatatcagcaatttaataaatattgtgtggagatttttgagagattgtttaattacagggtctaggtcataaaggttgact |
35275034 |
T |
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| Q |
166 |
aggtcttggacacattgataatttgtaatatt |
197 |
Q |
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| T |
35275033 |
agatcttggacacattgataatttgtagtatt |
35275002 |
T |
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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 35307058 - 35306991
Alignment:
| Q |
115 |
agatttttgagagtttgtttaattacagggtctaggtcataaaagttgactaggtcttggacacattg |
182 |
Q |
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| T |
35307058 |
agatttttgtgggattgattaattacaaggtctaagtcataaaggttgactagatcttggacacattg |
35306991 |
T |
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