View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8548A_low_337 (Length: 210)
Name: NF8548A_low_337
Description: NF8548A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8548A_low_337 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 2436296 - 2436459
Alignment:
| Q |
23 |
ggtggtgatgtcgttaattataacaatgttgttgaagatgttgttaacgacattgatcataatactaataagaagaagaaaaaggtgaaggttccttcat |
122 |
Q |
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| T |
2436296 |
ggtggtgatgtcgttaattataacaatgttgttgaagatgttgttaacgacattgatcataatactaataagaagaagaaaaaggtgaaggttccttcat |
2436395 |
T |
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| Q |
123 |
ttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggggtgtttgagttc |
186 |
Q |
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| T |
2436396 |
ttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggggtgtttgagttc |
2436459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 2449580 - 2449650
Alignment:
| Q |
104 |
aaggtgaaggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggg |
174 |
Q |
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| T |
2449580 |
aaggtaaaggttccttcatttcgaagattgttagcaatgaatgtgccagaatggaagcaagcgtgtttggg |
2449650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 2674693 - 2674623
Alignment:
| Q |
104 |
aaggtgaaggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggg |
174 |
Q |
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| T |
2674693 |
aaggtcaaggttccttcgtttcgaaggttgttggctatgaatgtgcctgaatggaagcaagcatgtttggg |
2674623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 2642856 - 2642786
Alignment:
| Q |
104 |
aaggtgaaggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggg |
174 |
Q |
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| T |
2642856 |
aaggtcaaggtttcttcgtttcaaaggttgttggcaatgaatgtgccagagtggaagcaagcatgtttggg |
2642786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 2674801 - 2674755
Alignment:
| Q |
23 |
ggtggtgatgtcgttaattataacaatgttgttgaagatgttgttaa |
69 |
Q |
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| T |
2674801 |
ggtgatgatatccttaattataacaatgttgttgaagatattgttaa |
2674755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 2621718 - 2621750
Alignment:
| Q |
36 |
ttaattataacaatgttgttgaagatgttgtta |
68 |
Q |
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| T |
2621718 |
ttaattataacaatgtcgttgaagatgttgtta |
2621750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 2621796 - 2621848
Alignment:
| Q |
111 |
aggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaa |
163 |
Q |
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| T |
2621796 |
aggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaa |
2621848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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